(4 nodes) Sporulation-like domain superfamily network (Pseudomonas mohnii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SEC04137.1	DedD protein. (219 aa)
	rlpA	Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides. (335 aa)
	SEC59105.1	Cell division protein FtsN. (237 aa)
	SEC58517.1	DamX protein. (532 aa)

Your Current Organism:

Pseudomonas mohnii

NCBI taxonomy Id: 395600
Other names: Arthrobacter sp. BDR2P2B2-M, CCUG 53115, DSM 18327, P. mohnii, Pseudomonas mohnii Camara et al. 2007, strain IpA-2

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SEC04137.1	SEC58517.1	SAMN05216205_1312	SAMN05216205_2706	DedD protein.	DamX protein.	0.400
SEC04137.1	SEC59105.1	SAMN05216205_1312	SAMN05216205_2722	DedD protein.	Cell division protein FtsN.	0.536
SEC04137.1	rlpA	SAMN05216205_1312	SAMN05216205_3827	DedD protein.	Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.	0.440
SEC58517.1	SEC04137.1	SAMN05216205_2706	SAMN05216205_1312	DamX protein.	DedD protein.	0.400
SEC58517.1	rlpA	SAMN05216205_2706	SAMN05216205_3827	DamX protein.	Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.	0.501
SEC59105.1	SEC04137.1	SAMN05216205_2722	SAMN05216205_1312	Cell division protein FtsN.	DedD protein.	0.536
rlpA	SEC04137.1	SAMN05216205_3827	SAMN05216205_1312	Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.	DedD protein.	0.440
rlpA	SEC58517.1	SAMN05216205_3827	SAMN05216205_2706	Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.	DamX protein.	0.501