(6 nodes) LysM domain superfamily network (Pseudomonas mohnii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SEC63598.1	LysM domain-containing protein. (149 aa)
	SED19419.1	Lipoprotein NlpD. (284 aa)
	SED67344.1	Membrane-bound lytic murein transglycosylase D. (482 aa)
	SEC53743.1	N-acetylmuramoyl-L-alanine amidase. (476 aa)
	SEC04344.1	Pilus assembly protein FimV. (876 aa)
	SEC71693.1	LysM domain-containing protein. (341 aa)

Your Current Organism:

Pseudomonas mohnii

NCBI taxonomy Id: 395600
Other names: Arthrobacter sp. BDR2P2B2-M, CCUG 53115, DSM 18327, P. mohnii, Pseudomonas mohnii Camara et al. 2007, strain IpA-2

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SEC04344.1	SEC71693.1	SAMN05216205_1317	SAMN05216205_3067	Pilus assembly protein FimV.	LysM domain-containing protein.	0.712
SEC53743.1	SEC63598.1	SAMN05216205_2584	SAMN05216205_2842	N-acetylmuramoyl-L-alanine amidase.	LysM domain-containing protein.	0.566
SEC53743.1	SEC71693.1	SAMN05216205_2584	SAMN05216205_3067	N-acetylmuramoyl-L-alanine amidase.	LysM domain-containing protein.	0.566
SEC53743.1	SED19419.1	SAMN05216205_2584	SAMN05216205_4497	N-acetylmuramoyl-L-alanine amidase.	Lipoprotein NlpD.	0.835
SEC53743.1	SED67344.1	SAMN05216205_2584	SAMN05216205_5890	N-acetylmuramoyl-L-alanine amidase.	Membrane-bound lytic murein transglycosylase D.	0.892
SEC63598.1	SEC53743.1	SAMN05216205_2842	SAMN05216205_2584	LysM domain-containing protein.	N-acetylmuramoyl-L-alanine amidase.	0.566
SEC63598.1	SED19419.1	SAMN05216205_2842	SAMN05216205_4497	LysM domain-containing protein.	Lipoprotein NlpD.	0.483
SEC63598.1	SED67344.1	SAMN05216205_2842	SAMN05216205_5890	LysM domain-containing protein.	Membrane-bound lytic murein transglycosylase D.	0.503
SEC71693.1	SEC04344.1	SAMN05216205_3067	SAMN05216205_1317	LysM domain-containing protein.	Pilus assembly protein FimV.	0.712
SEC71693.1	SEC53743.1	SAMN05216205_3067	SAMN05216205_2584	LysM domain-containing protein.	N-acetylmuramoyl-L-alanine amidase.	0.566
SEC71693.1	SED19419.1	SAMN05216205_3067	SAMN05216205_4497	LysM domain-containing protein.	Lipoprotein NlpD.	0.443
SEC71693.1	SED67344.1	SAMN05216205_3067	SAMN05216205_5890	LysM domain-containing protein.	Membrane-bound lytic murein transglycosylase D.	0.503
SED19419.1	SEC53743.1	SAMN05216205_4497	SAMN05216205_2584	Lipoprotein NlpD.	N-acetylmuramoyl-L-alanine amidase.	0.835
SED19419.1	SEC63598.1	SAMN05216205_4497	SAMN05216205_2842	Lipoprotein NlpD.	LysM domain-containing protein.	0.483
SED19419.1	SEC71693.1	SAMN05216205_4497	SAMN05216205_3067	Lipoprotein NlpD.	LysM domain-containing protein.	0.443
SED19419.1	SED67344.1	SAMN05216205_4497	SAMN05216205_5890	Lipoprotein NlpD.	Membrane-bound lytic murein transglycosylase D.	0.498
SED67344.1	SEC53743.1	SAMN05216205_5890	SAMN05216205_2584	Membrane-bound lytic murein transglycosylase D.	N-acetylmuramoyl-L-alanine amidase.	0.892
SED67344.1	SEC63598.1	SAMN05216205_5890	SAMN05216205_2842	Membrane-bound lytic murein transglycosylase D.	LysM domain-containing protein.	0.503
SED67344.1	SEC71693.1	SAMN05216205_5890	SAMN05216205_3067	Membrane-bound lytic murein transglycosylase D.	LysM domain-containing protein.	0.503
SED67344.1	SED19419.1	SAMN05216205_5890	SAMN05216205_4497	Membrane-bound lytic murein transglycosylase D.	Lipoprotein NlpD.	0.498