(36 nodes) Caprolactam degradation network (Pseudomonas mohnii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SEB60609.1	Enoyl-CoA hydratase/carnithine racemase. (261 aa)
	SEB61996.1	enoyl-CoA hydratase. (250 aa)
	SEB62746.1	Acetone monooxygenase. (549 aa)
	SEB64496.1	Short chain enoyl-CoA hydratase /Enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (263 aa)
	SEB64863.1	Transcriptional regulator, AraC family. (314 aa)
	SEB65689.1	Enoyl-CoA hydratase/carnithine racemase. (368 aa)
	SEB65758.1	Short chain enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (257 aa)
	SEB66376.1	enoyl-CoA hydratase. (270 aa)
	SEB75235.1	Strictosidine synthase. (362 aa)
	SEB78386.1	Transcriptional regulator, AraC family. (319 aa)
	SEB83412.1	Transcriptional regulator, AraC family with amidase-like domain. (336 aa)
	SEB91690.1	Transcriptional regulator, AraC family with amidase-like domain. (324 aa)
	SEB92124.1	Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD. (484 aa)
	SEB94447.1	Transcriptional regulator, AraC family with amidase-like domain. (316 aa)
	SEB97842.1	2-oxoglutaroyl-CoA hydrolase. (267 aa)
	fadB	Short chain enoyl-CoA hydratase; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family. (715 aa)
	SEC10752.1	enoyl-CoA hydratase. (229 aa)
	SEC10921.1	Short chain enoyl-CoA hydratase. (714 aa)
	SEC27341.1	Transcriptional regulator, AraC family. (326 aa)
	SEC34362.1	Gluconolactonase. (303 aa)
	SEC34702.1	Enoyl-CoA hydratase/carnithine racemase. (249 aa)
	SEC42507.1	Transcriptional regulator, AraC family with amidase-like domain. (331 aa)
	SEC83418.1	Transcriptional regulator, AraC family with amidase-like domain. (321 aa)
	SEC89267.1	Transcriptional regulator, AraC family with amidase-like domain. (367 aa)
	SEC89525.1	Transcriptional regulator, AraC family with amidase-like domain. (314 aa)
	SEC95857.1	Transcriptional regulator, AraC family with amidase-like domain. (330 aa)
	SED21176.1	Beta-galactosidase. (837 aa)
	SED25181.1	Enoyl-CoA hydratase/carnithine racemase. (370 aa)
	SED37461.1	Enoyl-CoA hydratase/carnithine racemase. (263 aa)
	SED40810.1	Cyclohexyl-isocyanide hydratase. (228 aa)
	SED40845.1	Transcriptional regulator, AraC family with amidase-like domain. (327 aa)
	SED41443.1	Enoyl-CoA hydratase. (260 aa)
	SED42118.1	Short chain enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (257 aa)
	SED58783.1	Short chain enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (258 aa)
	SED64493.1	enoyl-CoA hydratase. (272 aa)
	SED65730.1	crotonobetainyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (258 aa)

Your Current Organism:

Pseudomonas mohnii

NCBI taxonomy Id: 395600
Other names: Arthrobacter sp. BDR2P2B2-M, CCUG 53115, DSM 18327, P. mohnii, Pseudomonas mohnii Camara et al. 2007, strain IpA-2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SEB60609.1	SEB65689.1	SAMN05216205_0095	SAMN05216205_0256	Enoyl-CoA hydratase/carnithine racemase.	Enoyl-CoA hydratase/carnithine racemase.	0.627
SEB60609.1	SEB66376.1	SAMN05216205_0095	SAMN05216205_0275	Enoyl-CoA hydratase/carnithine racemase.	enoyl-CoA hydratase.	0.518
SEB60609.1	SEC10752.1	SAMN05216205_0095	SAMN05216205_1500	Enoyl-CoA hydratase/carnithine racemase.	enoyl-CoA hydratase.	0.467
SEB60609.1	SEC10921.1	SAMN05216205_0095	SAMN05216205_1504	Enoyl-CoA hydratase/carnithine racemase.	Short chain enoyl-CoA hydratase.	0.510
SEB60609.1	SED25181.1	SAMN05216205_0095	SAMN05216205_4686	Enoyl-CoA hydratase/carnithine racemase.	Enoyl-CoA hydratase/carnithine racemase.	0.590
SEB60609.1	SED65730.1	SAMN05216205_0095	SAMN05216205_5840	Enoyl-CoA hydratase/carnithine racemase.	crotonobetainyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.427
SEB60609.1	fadB	SAMN05216205_0095	SAMN05216205_1394	Enoyl-CoA hydratase/carnithine racemase.	Short chain enoyl-CoA hydratase; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family.	0.564
SEB61996.1	SEB65689.1	SAMN05216205_0141	SAMN05216205_0256	enoyl-CoA hydratase.	Enoyl-CoA hydratase/carnithine racemase.	0.600
SEB61996.1	SEB66376.1	SAMN05216205_0141	SAMN05216205_0275	enoyl-CoA hydratase.	enoyl-CoA hydratase.	0.512
SEB61996.1	SEC10752.1	SAMN05216205_0141	SAMN05216205_1500	enoyl-CoA hydratase.	enoyl-CoA hydratase.	0.516
SEB61996.1	SEC10921.1	SAMN05216205_0141	SAMN05216205_1504	enoyl-CoA hydratase.	Short chain enoyl-CoA hydratase.	0.510
SEB61996.1	SED25181.1	SAMN05216205_0141	SAMN05216205_4686	enoyl-CoA hydratase.	Enoyl-CoA hydratase/carnithine racemase.	0.548
SEB61996.1	SED65730.1	SAMN05216205_0141	SAMN05216205_5840	enoyl-CoA hydratase.	crotonobetainyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.477
SEB61996.1	fadB	SAMN05216205_0141	SAMN05216205_1394	enoyl-CoA hydratase.	Short chain enoyl-CoA hydratase; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family.	0.574
SEB62746.1	SEB75235.1	SAMN05216205_0167	SAMN05216205_0534	Acetone monooxygenase.	Strictosidine synthase.	0.450
SEB62746.1	SEC34362.1	SAMN05216205_0167	SAMN05216205_2088	Acetone monooxygenase.	Gluconolactonase.	0.441
SEB64496.1	SEB65689.1	SAMN05216205_0220	SAMN05216205_0256	Short chain enoyl-CoA hydratase /Enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	Enoyl-CoA hydratase/carnithine racemase.	0.622
SEB64496.1	SEB66376.1	SAMN05216205_0220	SAMN05216205_0275	Short chain enoyl-CoA hydratase /Enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	enoyl-CoA hydratase.	0.534
SEB64496.1	SEC10752.1	SAMN05216205_0220	SAMN05216205_1500	Short chain enoyl-CoA hydratase /Enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	enoyl-CoA hydratase.	0.492
SEB64496.1	SEC10921.1	SAMN05216205_0220	SAMN05216205_1504	Short chain enoyl-CoA hydratase /Enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	Short chain enoyl-CoA hydratase.	0.532