(6 nodes) Mixed, incl. Porin domain superfamily, and Outer membrane protein beta-barrel domain network (Rhizobium phaseoli)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ANL57839.1	Hypothetical protein. (85 aa)
	ropA-1	Porin outer membrane protein RopA 1; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane. (355 aa)
	ropB	Outer membrane protein RopB. (211 aa)
	ANL59805.1	Apolipoprotein type protein. (2367 aa)
	ANL60854.1	Ribonuclease E domain-containing protein. (839 aa)
	ropA-3	Porin outer membrane protein RopA 3; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane. (347 aa)

Your Current Organism:

Rhizobium phaseoli

NCBI taxonomy Id: 396
Other names: ATCC 14482, DSM 30137, IFO 14785, JCM 20683, NBRC 14785, NRRL L-321, R. phaseoli

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANL57839.1	ANL59805.1	AMC85_CH00406	AMC85_CH02435	Hypothetical protein.	Apolipoprotein type protein.	0.763
ANL57839.1	ANL60854.1	AMC85_CH00406	AMC85_CH03506	Hypothetical protein.	Ribonuclease E domain-containing protein.	0.762
ANL57839.1	ropA-1	AMC85_CH00406	AMC85_CH01436	Hypothetical protein.	Porin outer membrane protein RopA 1; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.	0.765
ANL57839.1	ropA-3	AMC85_CH00406	AMC85_CH03753	Hypothetical protein.	Porin outer membrane protein RopA 3; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.	0.765
ANL57839.1	ropB	AMC85_CH00406	AMC85_CH01540	Hypothetical protein.	Outer membrane protein RopB.	0.761
ANL59805.1	ANL57839.1	AMC85_CH02435	AMC85_CH00406	Apolipoprotein type protein.	Hypothetical protein.	0.763
ANL59805.1	ANL60854.1	AMC85_CH02435	AMC85_CH03506	Apolipoprotein type protein.	Ribonuclease E domain-containing protein.	0.775
ANL59805.1	ropA-1	AMC85_CH02435	AMC85_CH01436	Apolipoprotein type protein.	Porin outer membrane protein RopA 1; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.	0.774
ANL59805.1	ropA-3	AMC85_CH02435	AMC85_CH03753	Apolipoprotein type protein.	Porin outer membrane protein RopA 3; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.	0.774
ANL59805.1	ropB	AMC85_CH02435	AMC85_CH01540	Apolipoprotein type protein.	Outer membrane protein RopB.	0.739
ANL60854.1	ANL57839.1	AMC85_CH03506	AMC85_CH00406	Ribonuclease E domain-containing protein.	Hypothetical protein.	0.762
ANL60854.1	ANL59805.1	AMC85_CH03506	AMC85_CH02435	Ribonuclease E domain-containing protein.	Apolipoprotein type protein.	0.775
ANL60854.1	ropA-1	AMC85_CH03506	AMC85_CH01436	Ribonuclease E domain-containing protein.	Porin outer membrane protein RopA 1; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.	0.773
ANL60854.1	ropA-3	AMC85_CH03506	AMC85_CH03753	Ribonuclease E domain-containing protein.	Porin outer membrane protein RopA 3; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.	0.773
ANL60854.1	ropB	AMC85_CH03506	AMC85_CH01540	Ribonuclease E domain-containing protein.	Outer membrane protein RopB.	0.630
ropA-1	ANL57839.1	AMC85_CH01436	AMC85_CH00406	Porin outer membrane protein RopA 1; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.	Hypothetical protein.	0.765
ropA-1	ANL59805.1	AMC85_CH01436	AMC85_CH02435	Porin outer membrane protein RopA 1; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.	Apolipoprotein type protein.	0.774
ropA-1	ANL60854.1	AMC85_CH01436	AMC85_CH03506	Porin outer membrane protein RopA 1; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.	Ribonuclease E domain-containing protein.	0.773
ropA-1	ropA-3	AMC85_CH01436	AMC85_CH03753	Porin outer membrane protein RopA 1; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.	Porin outer membrane protein RopA 3; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.	0.547
ropA-1	ropB	AMC85_CH01436	AMC85_CH01540	Porin outer membrane protein RopA 1; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.	Outer membrane protein RopB.	0.844