STRINGSTRING
rplB rplB rpsQ rpsQ ANL59196.1 ANL59196.1 ANL59357.1 ANL59357.1 ANL59501.1 ANL59501.1 ANL59516.1 ANL59516.1 recG recG ssb ssb ANL59583.1 ANL59583.1 ANL59922.1 ANL59922.1 rho rho ANL57535.1 ANL57535.1 rpsA rpsA pnp pnp nusA nusA pheT pheT cspA-1 cspA-1 cspC cspC ANL60135.1 ANL60135.1 ugpC-1 ugpC-1 ligA ligA ANL60382.1 ANL60382.1 ANL60505.1 ANL60505.1 infA infA ANL58086.1 ANL58086.1 aglK aglK ANL58378.1 ANL58378.1 ANL58397.1 ANL58397.1 csaA csaA ugpC-2 ugpC-2 ANL60891.1 ANL60891.1 ruvA ruvA ANL61068.1 ANL61068.1 lysS lysS ANL61195.1 ANL61195.1 ANL61420.1 ANL61420.1 efp efp ANL58659.1 ANL58659.1 cspA-2 cspA-2 recO recO aspS aspS rne rne rpsL rpsL
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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rplB50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (278 aa)
rpsQ30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (79 aa)
ANL59196.1Sn-glycerol-3-phosphate ABC transporter ATP-binding protein; Protein involved in ATP binding, ATPase activity, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances and transport; Belongs to the ABC transporter superfamily. (371 aa)
ANL59357.1Cold shock protein CspA; Protein involved in nucleic acid binding and regulation of transcription, DNA-dependent. (192 aa)
ANL59501.1Sn-glycerol-3-phosphate ABC transporter ATP-binding protein; Protein involved in transporter activity, ATP binding, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances and transport; Belongs to the ABC transporter superfamily. (357 aa)
ANL59516.1Sn-glycerol-3-phosphate ABC transporter ATP-binding protein; Protein involved in transporter activity, ATP binding, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances and transport; Belongs to the ABC transporter superfamily. (359 aa)
recGATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. (701 aa)
ssbSingle-stranded DNA-binding protein Ssb; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. (171 aa)
ANL59583.1Sugar ABC transporter ATP-binding protein; Protein involved in transporter activity, ATP binding, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances and transport; Belongs to the ABC transporter superfamily. (397 aa)
ANL59922.1ABC transporter ATP-binding protein; Protein involved in ATP binding, ATPase activity, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances and transport; Belongs to the ABC transporter superfamily. (368 aa)
rhoTranscription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. (421 aa)
ANL57535.1Sugar ABC transporter ATP-binding protein; Protein involved in ATP binding, ATPase activity, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances and transport; Belongs to the ABC transporter superfamily. (358 aa)
rpsA30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. (567 aa)
pnpPolyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. (712 aa)
nusATranscription elongation factor NusA; Participates in both transcription termination and antitermination. (533 aa)
pheTphenylalanyl-tRNA synthetase subunit beta; Protein involved in nucleotide binding, RNA binding, ATP binding, phenylalanyl-tRNA aminoacylation and tRNA processing; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. (807 aa)
cspA-1Cold shock protein CspA 1; Protein involved in nucleic acid binding and regulation of transcription, DNA-dependent. (69 aa)
cspCCold shock protein CspC; Protein involved in nucleic acid binding and regulation of transcription, DNA-dependent. (70 aa)
ANL60135.1Sugar ABC transporter ATP-binding protein; Protein involved in transporter activity, ATP binding, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances and transport; Belongs to the ABC transporter superfamily. (381 aa)
ugpC-1Sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC 1; Part of the ABC transporter complex UgpABCE involved in sn- glycerol-3-phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. sn-glycerol-3- phosphate importer (TC 3.A.1.1.3) family. (344 aa)
ligADNA ligase (NAD(+)); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily. (718 aa)
ANL60382.1Sugar ABC transporter ATP-binding protein; Protein involved in ATP binding, ATPase activity, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances and transport; Belongs to the ABC transporter superfamily. (333 aa)
ANL60505.1Cold shock protein; Protein involved in nucleic acid binding and regulation of transcription, DNA-dependent. (71 aa)
infATranslation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. (72 aa)
ANL58086.1Protein involved in DNA ligase (ATP) activity, ATP binding, DNA repair and DNA recombination. (836 aa)
aglKAlpha-glucoside ABC transporter ATP-binding protein AglK; Protein involved in ATP binding, ATPase activity, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances and transport; Belongs to the ABC transporter superfamily. (362 aa)
ANL58378.1RNA-binding S1 domain-containing protein; Protein involved in hydrolase activity, acting on ester bonds and nucleobase-containing compound metabolic process. (769 aa)
ANL58397.1tRNA (uracil-5-)-methyltransferase protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (416 aa)
csaASecretion chaperone protein CsaA; Protein involved in tRNA binding. (113 aa)
ugpC-2Sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC 2; Part of the ABC transporter complex UgpABCE involved in sn- glycerol-3-phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. sn-glycerol-3- phosphate importer (TC 3.A.1.1.3) family. (369 aa)
ANL60891.1Sn-glycerol-3-phosphate ABC transporter ATP-binding protein; Protein involved in transporter activity, ATP binding, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances and transport; Belongs to the ABC transporter superfamily. (359 aa)
ruvAHolliday junction ATP-dependent DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. (204 aa)
ANL61068.1Nodulation efficiency NfeD-like protein. (151 aa)
lysSlysyl-tRNA synthetase; Protein involved in nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding and tRNA aminoacylation for protein translation; Belongs to the class-II aminoacyl-tRNA synthetase family. (498 aa)
ANL61195.1Sugar ABC transporter ATP-binding protein; Protein involved in transporter activity, ATP binding, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances and transport; Belongs to the ABC transporter superfamily. (332 aa)
ANL61420.1Sn-glycerol-3-phosphate ABC transporter ATP-binding protein; Protein involved in ATP binding, ATPase activity, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances and transport; Belongs to the ABC transporter superfamily. (361 aa)
efpElongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. (189 aa)
ANL58659.1Protein involved in DNA ligase (ATP) activity, ATP binding, DNA repair and DNA recombination. (541 aa)
cspA-2Cold shock protein CspA 2; Protein involved in nucleic acid binding and regulation of transcription, DNA-dependent. (69 aa)
recODNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. (256 aa)
aspSaspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. (596 aa)
rneRibonuclease E/G protein; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily. (960 aa)
rpsL30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. (123 aa)
Your Current Organism:
Rhizobium phaseoli
NCBI taxonomy Id: 396
Other names: ATCC 14482, DSM 30137, IFO 14785, JCM 20683, NBRC 14785, NRRL L-321, R. phaseoli
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