STRINGSTRING
TK90_2225 TK90_2225 TK90_2457 TK90_2457 TK90_0288 TK90_0288 TK90_0555 TK90_0555 TK90_1307 TK90_1307 TK90_1351 TK90_1351 TK90_1620 TK90_1620 TK90_1919 TK90_1919 TK90_1990 TK90_1990 TK90_2059 TK90_2059 TK90_2096 TK90_2096
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
TK90_2225PFAM: outer membrane efflux protein; KEGG: aeh:Mlg_0495 outer membrane efflux protein. (547 aa)
TK90_2457TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: noc:Noc_2616 type I secretion outer membrane protein, TolC. (449 aa)
TK90_0288PFAM: outer membrane efflux protein; KEGG: tbd:Tbd_2116 hypothetical protein. (464 aa)
TK90_0555PFAM: protein of unknown function UPF0118; KEGG: sml:Smlt1128 putative transmembrane protein. (364 aa)
TK90_1307TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: azo:azo0654 putative outer membrane efflux protein. (484 aa)
TK90_1351PFAM: outer membrane efflux protein; KEGG: aeh:Mlg_0651 outer membrane efflux protein. (528 aa)
TK90_1620TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: aeh:Mlg_1407 RND efflux system outer membrane lipoprotein. (495 aa)
TK90_1919TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: aeh:Mlg_1407 RND efflux system outer membrane lipoprotein. (482 aa)
TK90_1990PFAM: protein of unknown function UPF0118; KEGG: aeh:Mlg_2482 hypothetical protein. (372 aa)
TK90_2059PFAM: protein of unknown function UPF0118; KEGG: ote:Oter_3149 hypothetical protein. (406 aa)
TK90_2096PFAM: outer membrane efflux protein; KEGG: pag:PLES_27731 outer membrane protein precursor CzcC. (419 aa)
Your Current Organism:
Thioalkalivibrio sp. K90mix
NCBI taxonomy Id: 396595
Other names: T. sp. K90mix
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