36 items (Veillonella atypica) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

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protein homology

Your Input:
	hisC	Histidinol-phosphate transaminase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. (360 aa)
	ARF99781.1	YggS family pyridoxal phosphate enzyme; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family. (228 aa)
	ARF99790.1	Acetolactate synthase, large subunit, biosynthetic type; Derived by automated computational analysis using gene prediction method: Protein Homology. (569 aa)
	ARF99791.1	Threonine ammonia-lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (407 aa)
	porB	2-oxoacid ferredoxin oxidoreductase; Catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (290 aa)
	ARF99958.1	1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily. (584 aa)
	ARG00075.1	Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (397 aa)
	ARG00108.1	methylmalonyl-CoA mutase; Derived by automated computational analysis using gene prediction method: Protein Homology. (729 aa)
	ARG00109.1	methylmalonyl-CoA mutase; Derived by automated computational analysis using gene prediction method: Protein Homology. (720 aa)
	ARG00169.1	Methionine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (250 aa)
	ARF99251.1	Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (376 aa)
	ARF99290.1	Pyruvate oxidase; Catalyzes the formation of acetate from pyruvate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the TPP enzyme family. (581 aa)
	ARF99328.1	B12-binding domain-containing radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (581 aa)
	ARF99338.1	8-amino-7-oxononanoate synthase; Catalyzes the decarboxylative condensation of pimeloyl-[acyl- carrier protein] and L-alanine to produce 8-amino-7-oxononanoate (AON), [acyl-carrier protein], and carbon dioxide. (387 aa)
	ARF99368.1	Cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. (409 aa)
	glyA	Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. (413 aa)
	ARF99447.1	Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (415 aa)
	ARF98618.1	Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. (370 aa)
	bioA	Adenosylmethionine--8-amino-7-oxononanoate transaminase; Catalyzes the transfer of the alpha-amino group from S- adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. BioA subfamily. (462 aa)
	ARF98534.1	Aminotransferase class I/II; Derived by automated computational analysis using gene prediction method: Protein Homology. (438 aa)
	ARF98838.1	D-amino-acid transaminase; Acts on the D-isomers of alanine, leucine, aspartate, glutamate, aminobutyrate, norvaline and asparagine. The enzyme transfers an amino group from a substrate D-amino acid to the pyridoxal phosphate cofactor to form pyridoxamine and an alpha-keto acid in the first half-reaction. (285 aa)
	ARF99080.1	B12-binding domain-containing radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (446 aa)
	menD	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Belongs to the TPP enzyme family. MenD subfamily. (579 aa)
	ARF98757.1	LL-diaminopimelate aminotransferase; Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL- diaminopimelate; Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family. LL-diaminopimelate aminotransferase subfamily. (409 aa)
	ARF98720.1	Molybdenum hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (270 aa)
	scpA_2	methylmalonyl-CoA mutase; Derived by automated computational analysis using gene prediction method: Protein Homology. (131 aa)
	ARF99609.1	methylmalonyl-CoA mutase; Derived by automated computational analysis using gene prediction method: Protein Homology. (548 aa)
	ARF99636.1	MOSC domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (146 aa)
	ARF99667.1	Aspartate aminotransferase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (395 aa)
	ARF99674.1	Acetolactate synthase, large subunit, biosynthetic type; Derived by automated computational analysis using gene prediction method: Protein Homology. (575 aa)
	ARF99090.1	Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (397 aa)
	ARF99745.1	Pyruvate:ferredoxin (flavodoxin) oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1179 aa)
	hemL	Glutamate-1-semialdehyde-2,1-aminomutase; Derived by automated computational analysis using gene prediction method: Protein Homology. (433 aa)
	ARF98700.1	O-acetylhomoserine aminocarboxypropyltransferase; Catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol; Derived by automated computational analysis using gene prediction method: Protein Homology. (423 aa)
	ARF98698.1	Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (394 aa)
	metB_1	Cystathionine gamma-synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (377 aa)

Your Current Organism:

Veillonella atypica

NCBI taxonomy Id: 39777
Other names: ATCC 17744, DSM 20739, NCTC 11830, V. atypica, Veillonella parvula subsp. atypica, strain Kon

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARF98534.1	ARF98698.1	B7L28_00630	B7L28_01500	Aminotransferase class I/II; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.908
ARF98534.1	ARF98838.1	B7L28_00630	B7L28_02230	Aminotransferase class I/II; Derived by automated computational analysis using gene prediction method: Protein Homology.	D-amino-acid transaminase; Acts on the D-isomers of alanine, leucine, aspartate, glutamate, aminobutyrate, norvaline and asparagine. The enzyme transfers an amino group from a substrate D-amino acid to the pyridoxal phosphate cofactor to form pyridoxamine and an alpha-keto acid in the first half-reaction.	0.908
ARF98534.1	ARF99447.1	B7L28_00630	B7L28_05455	Aminotransferase class I/II; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.927
ARF98534.1	ARF99745.1	B7L28_00630	B7L28_07045	Aminotransferase class I/II; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyruvate:ferredoxin (flavodoxin) oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.542
ARF98534.1	ARG00075.1	B7L28_00630	B7L28_08860	Aminotransferase class I/II; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.919
ARF98534.1	hisC	B7L28_00630	B7L28_01285	Aminotransferase class I/II; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidinol-phosphate transaminase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.	0.908
ARF98534.1	porB	B7L28_00630	B7L28_07425	Aminotransferase class I/II; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-oxoacid ferredoxin oxidoreductase; Catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.807
ARF98618.1	ARF98838.1	B7L28_01080	B7L28_02230	Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.	D-amino-acid transaminase; Acts on the D-isomers of alanine, leucine, aspartate, glutamate, aminobutyrate, norvaline and asparagine. The enzyme transfers an amino group from a substrate D-amino acid to the pyridoxal phosphate cofactor to form pyridoxamine and an alpha-keto acid in the first half-reaction.	0.914
ARF98698.1	ARF98534.1	B7L28_01500	B7L28_00630	Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aminotransferase class I/II; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.908
ARF98698.1	ARF98700.1	B7L28_01500	B7L28_01510	Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	O-acetylhomoserine aminocarboxypropyltransferase; Catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.915
ARF98698.1	ARF99791.1	B7L28_01500	B7L28_07285	Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Threonine ammonia-lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.804
ARF98698.1	ARG00075.1	B7L28_01500	B7L28_08860	Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.918
ARF98698.1	metB_1	B7L28_01500	B7L28_01495	Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cystathionine gamma-synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.985
ARF98700.1	ARF98698.1	B7L28_01510	B7L28_01500	O-acetylhomoserine aminocarboxypropyltransferase; Catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.915
ARF98700.1	ARF99745.1	B7L28_01510	B7L28_07045	O-acetylhomoserine aminocarboxypropyltransferase; Catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyruvate:ferredoxin (flavodoxin) oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.461
ARF98700.1	ARF99791.1	B7L28_01510	B7L28_07285	O-acetylhomoserine aminocarboxypropyltransferase; Catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol; Derived by automated computational analysis using gene prediction method: Protein Homology.	Threonine ammonia-lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.808
ARF98700.1	ARG00075.1	B7L28_01510	B7L28_08860	O-acetylhomoserine aminocarboxypropyltransferase; Catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.910
ARF98700.1	metB_1	B7L28_01510	B7L28_01495	O-acetylhomoserine aminocarboxypropyltransferase; Catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cystathionine gamma-synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.932
ARF98720.1	ARF99636.1	B7L28_01610	B7L28_06435	Molybdenum hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	MOSC domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.450
ARF98720.1	ARF99745.1	B7L28_01610	B7L28_07045	Molybdenum hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyruvate:ferredoxin (flavodoxin) oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.443