STRINGSTRING
ARF98619.1 ARF98619.1 glnA glnA ARF99366.1 ARF99366.1 glyA glyA ARF99501.1 ARF99501.1 mce mce scpA_2 scpA_2 ARF99609.1 ARF99609.1 ARF99623.1 ARF99623.1 ARF99628.1 ARF99628.1 ARF99641.1 ARF99641.1 ARF99642.1 ARF99642.1 ARG00108.1 ARG00108.1 ARG00109.1 ARG00109.1 ARG00120.1 ARG00120.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ARF98619.1Hydroxyacid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (316 aa)
glnAGlutamine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutamine synthetase family. (633 aa)
ARF99366.1Phosphoglycolate phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (227 aa)
glyASerine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. (413 aa)
ARF99501.1HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (219 aa)
mcemethylmalonyl-CoA epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (140 aa)
scpA_2methylmalonyl-CoA mutase; Derived by automated computational analysis using gene prediction method: Protein Homology. (131 aa)
ARF99609.1methylmalonyl-CoA mutase; Derived by automated computational analysis using gene prediction method: Protein Homology. (548 aa)
ARF99623.1Ribulose 1,5-bisphosphate carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (396 aa)
ARF99628.1D-glycerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (332 aa)
ARF99641.1L(+)-tartrate dehydratase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology. (203 aa)
ARF99642.1L(+)-tartrate dehydratase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. (300 aa)
ARG00108.1methylmalonyl-CoA mutase; Derived by automated computational analysis using gene prediction method: Protein Homology. (729 aa)
ARG00109.1methylmalonyl-CoA mutase; Derived by automated computational analysis using gene prediction method: Protein Homology. (720 aa)
ARG00120.1Lactaldehyde reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (383 aa)
Your Current Organism:
Veillonella atypica
NCBI taxonomy Id: 39777
Other names: ATCC 17744, DSM 20739, NCTC 11830, V. atypica, Veillonella parvula subsp. atypica, strain Kon
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