STRINGSTRING
B7L28_00925 B7L28_00925 ARF98590.1 ARF98590.1 ARF98619.1 ARF98619.1 ARF98671.1 ARF98671.1 tme tme tal tal glpX glpX prs prs ARF99013.1 ARF99013.1 ARF99094.1 ARF99094.1 ARF99148.1 ARF99148.1 ARF99149.1 ARF99149.1 ARF99197.1 ARF99197.1 ARF99252.1 ARF99252.1 ARF99383.1 ARF99383.1 ARF99401.1 ARF99401.1 ARF99417.1 ARF99417.1 eno eno gpmI gpmI tpiA tpiA pgk pgk ARF99432.1 ARF99432.1 glyA glyA rpiB rpiB ARF99495.1 ARF99495.1 ackA ackA mce mce scpA_2 scpA_2 ARF99609.1 ARF99609.1 ARF99610.1 ARF99610.1 ARF99623.1 ARF99623.1 fhs fhs ARF99745.1 ARF99745.1 ARF99756.1 ARF99756.1 ARF99791.1 ARF99791.1 pgl pgl porB porB ARF99811.1 ARF99811.1 folD folD ARF99872.1 ARF99872.1 sdaAB sdaAB fumB fumB ARF99879.1 ARF99879.1 ARF99899.1 ARF99899.1 ARF99941.1 ARF99941.1 ARG00022.1 ARG00022.1 ARG00058.1 ARG00058.1 ARG00059.1 ARG00059.1 ARG00070.1 ARG00070.1 ARG00108.1 ARG00108.1 ARG00109.1 ARG00109.1 ARG00171.1 ARG00171.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
B7L28_00925Diguanylate cyclase; Frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (542 aa)
ARF98590.1Carbon-monoxide dehydrogenase catalytic subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (734 aa)
ARF98619.1Hydroxyacid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (316 aa)
ARF98671.1Serine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (203 aa)
tmeNAD-dependent malic enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology. (401 aa)
talTransaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily. (214 aa)
glpXFructose-bisphosphatase class II; Derived by automated computational analysis using gene prediction method: Protein Homology. (320 aa)
prsRibose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. (317 aa)
ARF99013.1Glucose-6-phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (475 aa)
ARF99094.1Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. (1148 aa)
ARF99148.1Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (278 aa)
ARF99149.1Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (310 aa)
ARF99197.1Ribulose-phosphate 3-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribulose-phosphate 3-epimerase family. (216 aa)
ARF99252.1Alpha-ribazole phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phosphoglycerate mutase family. (212 aa)
ARF99383.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (186 aa)
ARF99401.1Phosphoenolpyruvate synthase; Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate; Belongs to the PEP-utilizing enzyme family. (793 aa)
ARF99417.16-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis; Belongs to the phosphofructokinase type A (PFKA) family. (319 aa)
enoPhosphopyruvate hydratase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. (428 aa)
gpmIPhosphoglycerate mutase (2,3-diphosphoglycerate-independent); Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate. (507 aa)
tpiATriose-phosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family. (256 aa)
pgkPhosphoglycerate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phosphoglycerate kinase family. (392 aa)
ARF99432.1Type I glyceraldehyde-3-phosphate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. (336 aa)
glyASerine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. (413 aa)
rpiBRibose 5-phosphate isomerase B; Derived by automated computational analysis using gene prediction method: Protein Homology. (145 aa)
ARF99495.1Fructose-1,6-bisphosphate aldolase, class II; Derived by automated computational analysis using gene prediction method: Protein Homology. (309 aa)
ackAAcetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. (401 aa)
mcemethylmalonyl-CoA epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (140 aa)
scpA_2methylmalonyl-CoA mutase; Derived by automated computational analysis using gene prediction method: Protein Homology. (131 aa)
ARF99609.1methylmalonyl-CoA mutase; Derived by automated computational analysis using gene prediction method: Protein Homology. (548 aa)
ARF99610.1acetyl-CoA hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (500 aa)
ARF99623.1Ribulose 1,5-bisphosphate carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (396 aa)
fhsFormate--tetrahydrofolate ligase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the formate--tetrahydrofolate ligase family. (556 aa)
ARF99745.1Pyruvate:ferredoxin (flavodoxin) oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1179 aa)
ARF99756.1Pyruvate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the pyruvate kinase family. (582 aa)
ARF99791.1Threonine ammonia-lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (407 aa)
pgl6-phosphogluconolactonase; Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate. (251 aa)
porB2-oxoacid ferredoxin oxidoreductase; Catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (290 aa)
ARF99811.12-oxoglutarate ferredoxin oxidoreductase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. (583 aa)
folDMethenyltetrahydrofolate cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. (280 aa)
ARF99872.1L-serine dehydratase, iron-sulfur-dependent subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the iron-sulfur dependent L-serine dehydratase family. (290 aa)
sdaABL-serine ammonia-lyase, iron-sulfur-dependent, subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the iron-sulfur dependent L-serine dehydratase family. (220 aa)
fumBFumarate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (186 aa)
ARF99879.1Fumarate hydratase; Catalyzes the reversible hydration of fumaric acid to yield I-malic acid; Derived by automated computational analysis using gene prediction method: Protein Homology. (280 aa)
ARF99899.1Glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (418 aa)
ARF99941.1Cysteine synthase A; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cysteine synthase/cystathionine beta- synthase family. (311 aa)
ARG00022.1Class II fumarate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (451 aa)
ARG00058.1Heterodisulfide reductase subunit B; Derived by automated computational analysis using gene prediction method: Protein Homology. (291 aa)
ARG00059.1(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (320 aa)
ARG00070.1Phosphate acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (332 aa)
ARG00108.1methylmalonyl-CoA mutase; Derived by automated computational analysis using gene prediction method: Protein Homology. (729 aa)
ARG00109.1methylmalonyl-CoA mutase; Derived by automated computational analysis using gene prediction method: Protein Homology. (720 aa)
ARG00171.15,10-methylenetetrahydrofolate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the methylenetetrahydrofolate reductase family. (285 aa)
Your Current Organism:
Veillonella atypica
NCBI taxonomy Id: 39777
Other names: ATCC 17744, DSM 20739, NCTC 11830, V. atypica, Veillonella parvula subsp. atypica, strain Kon
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