STRINGSTRING
Aave_4322 Aave_4322 Aave_4323 Aave_4323 Aave_4324 Aave_4324 Aave_4325 Aave_4325 Aave_4326 Aave_4326 Aave_4327 Aave_4327 Aave_4328 Aave_4328 Aave_4330 Aave_4330
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Aave_4322Transcriptional regulator, Fis family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: bur:Bcep18194_B0723 RND efflux system, outer membrane lipoprotein, NodT family. (515 aa)
Aave_4323PFAM: protein of unknown function DUF214; KEGG: ccr:CC2090 hypothetical protein. (378 aa)
Aave_4324PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: ccr:CC2091 ABC transporter, ATP-binding protein. (248 aa)
Aave_4325PFAM: secretion protein HlyD family protein; KEGG: ccr:CC2092 HlyD family secretion protein. (322 aa)
Aave_4326TIGRFAM: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; PFAM: HAD-superfamily hydrolase, subfamily IB hypothetical 1; KEGG: pfl:PFL_4883 phosphoserine phosphatase, putative. (249 aa)
Aave_4327PFAM: alpha/beta hydrolase fold; KEGG: pfl:PFL_4885 carboxylesterase. (306 aa)
Aave_4328KEGG: pfl:PFL_4879 hypothetical protein. (128 aa)
Aave_4330PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: dvu:DVUA0045 aminotransferase, DegT/DnrJ/EryC1/StrS family; Belongs to the DegT/DnrJ/EryC1 family. (412 aa)
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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