STRINGSTRING
Aave_0007 Aave_0007 Aave_0008 Aave_0008 Aave_0009 Aave_0009 Aave_0010 Aave_0010 Aave_3415 Aave_3415 Aave_3416 Aave_3416 Aave_3417 Aave_3417 Aave_3846 Aave_3846 Aave_4263 Aave_4263 Aave_4264 Aave_4264 Aave_4265 Aave_4265 Aave_4266 Aave_4266 Aave_4267 Aave_4267 Aave_4268 Aave_4268 Aave_4269 Aave_4269 Aave_4270 Aave_4270 Aave_4271 Aave_4271 Aave_4272 Aave_4272
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Aave_0007Transcriptional regulator, ArsR family; PFAM: DNA polymerase, beta domain protein region; KEGG: lpp:plpp0094 hypothetical protein. (209 aa)
Aave_0008PFAM: protein of unknown function UPF0153; KEGG: shm:Shewmr7_3669 protein of unknown function UPF0153. (142 aa)
Aave_0009PFAM: OsmC family protein; KEGG: rru:Rru_A0580 OsmC-like protein. (145 aa)
Aave_0010PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rfr:Rfer_4119 4Fe-4S ferredoxin, iron-sulfur binding. (86 aa)
Aave_3415PFAM: GCN5-related N-acetyltransferase; thioesterase superfamily protein; KEGG: pol:Bpro_2524 4-hydroxybenzoyl-CoA thioesterase. (289 aa)
Aave_3416PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: pol:Bpro_2525 alpha/beta hydrolase fold-3. (359 aa)
Aave_3417PFAM: Hydratase/decarboxylase; KEGG: dar:Daro_4183 hydratase/decarboxylase. (289 aa)
Aave_3846PFAM: 5-carboxymethyl-2-hydroxymuconate isomerase; KEGG: pen:PSEEN4037 5-carboxymethyl-2-hydroxymuconate delta isomerase. (119 aa)
Aave_4263PFAM: flavin reductase domain protein, FMN-binding; KEGG: reu:Reut_C5933 hypothetical protein. (210 aa)
Aave_4264PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: bcn:Bcen_2208 transposase IS116/IS110/IS902. (316 aa)
Aave_4265PFAM: uncharacterized protein UPF0065; KEGG: reu:Reut_C5932 hypothetical protein. (328 aa)
Aave_4266PFAM: Endoribonuclease L-PSP; KEGG: reu:Reut_C5931 endoribonuclease L-PSP. (141 aa)
Aave_4267PFAM: amidohydrolase 2; KEGG: reu:Reut_C5930 amidohydrolase 2. (296 aa)
Aave_4268PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: reu:Reut_C5929 5-carboxymethyl-2-hydroxymuconate delta-isomerase. (289 aa)
Aave_4269KEGG: reu:Reut_C5928 hydratase/decarboxylase; TIGRFAM: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase; PFAM: Hydratase/decarboxylase. (282 aa)
Aave_4270PFAM: HpcH/HpaI aldolase; KEGG: reu:Reut_C5927 2-dehydro-3-deoxyglucarate aldolase; Belongs to the HpcH/HpaI aldolase family. (271 aa)
Aave_4271PFAM: regulatory protein, MarR; KEGG: pol:Bpro_0623 transcriptional regulator, MarR family. (156 aa)
Aave_4272PFAM: OsmC family protein; KEGG: pfo:Pfl_2206 OsmC-like protein. (138 aa)
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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