STRINGSTRING
Aave_1037 Aave_1037 Aave_0806 Aave_0806 Aave_0579 Aave_0579 Aave_0575 Aave_0575 Aave_0567 Aave_0567 Aave_1040 Aave_1040 Aave_1041 Aave_1041 Aave_1042 Aave_1042 Aave_1043 Aave_1043 Aave_1412 Aave_1412 Aave_2004 Aave_2004 Aave_3034 Aave_3034 Aave_3362 Aave_3362 Aave_3998 Aave_3998 Aave_4205 Aave_4205 Aave_4730 Aave_4730 Aave_1039 Aave_1039 Aave_3024 Aave_3024 Aave_2926 Aave_2926 Aave_1426 Aave_1426
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Aave_1037KEGG: rme:Rmet_4161 putative transmembrane protein. (457 aa)
Aave_0806KEGG: pfl:PFL_1902 sensory box-containing diguanylate cyclase, putative; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; SMART: PAS domain containing protein. (463 aa)
Aave_0579Transcriptional regulator/antitoxin, MazE; PFAM: SpoVT/AbrB domain protein; KEGG: xac:XAC2188 cell growth regulatory protein. (96 aa)
Aave_0575PFAM: Endoribonuclease L-PSP; KEGG: pol:Bpro_4397 endoribonuclease L-PSP. (125 aa)
Aave_0567Phage transcriptional regulator, AlpA; PFAM: Prophage CP4-57 regulatory; KEGG: xac:XAC2204 prophage regulatory protein. (75 aa)
Aave_1040KEGG: rme:Rmet_4158 putative transmembrane protein. (467 aa)
Aave_1041KEGG: rso:RSc2274 putative lipoprotein. (184 aa)
Aave_1042PFAM: Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; KEGG: rso:RSc2275 putative signal peptide protein. (1345 aa)
Aave_1043KEGG: rso:RSc2276 putative signal peptide protein. (941 aa)
Aave_1412TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rfr:Rfer_0005 diguanylate cyclase. (516 aa)
Aave_2004KEGG: mfa:Mfla_2213 hypothetical protein. (205 aa)
Aave_3034TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rfr:Rfer_1673 diguanylate cyclase. (347 aa)
Aave_3362Phage transcriptional regulator, AlpA; PFAM: Prophage CP4-57 regulatory; KEGG: xac:XAC2180 hypothetical protein. (117 aa)
Aave_3998TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; KEGG: pfo:Pfl_3550 putative diguanylate cyclase (GGDEF domain). (591 aa)
Aave_4205TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Diverse 7TM receptor, transmembrane region; KEGG: pae:PA4929 hypothetical protein. (642 aa)
Aave_4730TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; KEGG: cvi:CV3252 hypothetical protein. (572 aa)
Aave_1039KEGG: rso:RSc2272 probable transmembrane protein. (337 aa)
Aave_3024TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rfr:Rfer_1305 diguanylate cyclase. (260 aa)
Aave_2926TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rme:Rmet_2262 diguanylate cyclase (GGDEF domain). (250 aa)
Aave_1426KEGG: pol:Bpro_2606 hypothetical protein. (221 aa)
Your Current Organism:
Acidovorax citrulli
NCBI taxonomy Id: 397945
Other names: A. citrulli AAC00-1, Acidovorax avenae subsp. citrulli AAC00-1, Acidovorax citrulli AAC00-1, Acidovorax citrulli str. AAC00-1, Acidovorax citrulli strain AAC00-1
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