(17 nodes) Mixed, incl. NGP1NT (NUC091) domain, and Ribosome localization network (Manihot esculenta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A251JGC9	GN3L_Grn1 domain-containing protein. (437 aa)
	A0A251JWW7	TRASH domain-containing protein. (168 aa)
	EIF6	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis. (245 aa)
	A0A251M289	Nuclear/nucleolar GTPase 2; GTPase involved in pre-60S ribosomal subunit maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. (559 aa)
	A0A2C9UU73	Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family. (810 aa)
	A0A2C9V3S3	Uncharacterized protein. (190 aa)
	A0A2C9V8G9	C2H2-type domain-containing protein. (119 aa)
	A0A2C9VB44	Uncharacterized protein. (373 aa)
	A0A2C9VBW3	Peptidase_M24 domain-containing protein. (394 aa)
	A0A2C9VFC1	Uncharacterized protein. (260 aa)
	A0A2C9VJF0	WD_REPEATS_REGION domain-containing protein. (471 aa)
	A0A2C9VRI8	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (680 aa)
	A0A2C9VYT8	Uncharacterized protein. (174 aa)
	A0A2C9W6F8	Nuclear/nucleolar GTPase 2; GTPase involved in pre-60S ribosomal subunit maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. (565 aa)
	A0A2C9W820	NGP1NT domain-containing protein. (137 aa)
	A0A2C9WGA7	U1-type domain-containing protein. (356 aa)
	A0A2C9WK39	60S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family. (510 aa)

Your Current Organism:

Manihot esculenta

NCBI taxonomy Id: 3983
Other names: M. esculenta, Manihot esculenta Crantz, Manihot utilissima, cassava, manioc, tapioca, yuca

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A251JGC9	A0A251JWW7	A0A251JGC9	A0A251JWW7	GN3L_Grn1 domain-containing protein.	TRASH domain-containing protein.	0.957
A0A251JGC9	A0A251M289	A0A251JGC9	A0A251M289	GN3L_Grn1 domain-containing protein.	Nuclear/nucleolar GTPase 2; GTPase involved in pre-60S ribosomal subunit maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.	0.990
A0A251JGC9	A0A2C9UU73	A0A251JGC9	A0A2C9UU73	GN3L_Grn1 domain-containing protein.	Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.	0.986
A0A251JGC9	A0A2C9V3S3	A0A251JGC9	A0A2C9V3S3	GN3L_Grn1 domain-containing protein.	Uncharacterized protein.	0.901
A0A251JGC9	A0A2C9V8G9	A0A251JGC9	A0A2C9V8G9	GN3L_Grn1 domain-containing protein.	C2H2-type domain-containing protein.	0.921
A0A251JGC9	A0A2C9VB44	A0A251JGC9	A0A2C9VB44	GN3L_Grn1 domain-containing protein.	Uncharacterized protein.	0.955
A0A251JGC9	A0A2C9VBW3	A0A251JGC9	A0A2C9VBW3	GN3L_Grn1 domain-containing protein.	Peptidase_M24 domain-containing protein.	0.955
A0A251JGC9	A0A2C9VFC1	A0A251JGC9	A0A2C9VFC1	GN3L_Grn1 domain-containing protein.	Uncharacterized protein.	0.912
A0A251JGC9	A0A2C9VJF0	A0A251JGC9	A0A2C9VJF0	GN3L_Grn1 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.879
A0A251JGC9	A0A2C9VRI8	A0A251JGC9	A0A2C9VRI8	GN3L_Grn1 domain-containing protein.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.965
A0A251JGC9	A0A2C9VYT8	A0A251JGC9	A0A2C9VYT8	GN3L_Grn1 domain-containing protein.	Uncharacterized protein.	0.912
A0A251JGC9	A0A2C9W6F8	A0A251JGC9	A0A2C9W6F8	GN3L_Grn1 domain-containing protein.	Nuclear/nucleolar GTPase 2; GTPase involved in pre-60S ribosomal subunit maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.	0.990
A0A251JGC9	A0A2C9W820	A0A251JGC9	A0A2C9W820	GN3L_Grn1 domain-containing protein.	NGP1NT domain-containing protein.	0.906
A0A251JGC9	A0A2C9WGA7	A0A251JGC9	A0A2C9WGA7	GN3L_Grn1 domain-containing protein.	U1-type domain-containing protein.	0.850
A0A251JGC9	A0A2C9WK39	A0A251JGC9	A0A2C9WK39	GN3L_Grn1 domain-containing protein.	60S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family.	0.963
A0A251JGC9	EIF6	A0A251JGC9	A0A251LRH2	GN3L_Grn1 domain-containing protein.	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	0.943
A0A251JWW7	A0A251JGC9	A0A251JWW7	A0A251JGC9	TRASH domain-containing protein.	GN3L_Grn1 domain-containing protein.	0.957
A0A251JWW7	A0A251M289	A0A251JWW7	A0A251M289	TRASH domain-containing protein.	Nuclear/nucleolar GTPase 2; GTPase involved in pre-60S ribosomal subunit maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.	0.956
A0A251JWW7	A0A2C9UU73	A0A251JWW7	A0A2C9UU73	TRASH domain-containing protein.	Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.	0.974
A0A251JWW7	A0A2C9V3S3	A0A251JWW7	A0A2C9V3S3	TRASH domain-containing protein.	Uncharacterized protein.	0.949