11 items (Manihot esculenta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2C9UZM9	Uncharacterized protein. (459 aa)
	A0A2C9VC19	Uncharacterized protein. (395 aa)
	A0A2C9VI92	Uncharacterized protein. (125 aa)
	A0A2C9VS45	Uncharacterized protein. (82 aa)
	A0A2C9VTB8	Uncharacterized protein. (393 aa)
	A0A2C9W3J2	Uncharacterized protein. (465 aa)
	A0A2C9W4R3	C2 NT-type domain-containing protein. (1117 aa)
	A0A2C9WJ41	Uncharacterized protein. (75 aa)
	A0A2C9WLH9	Uncharacterized protein. (179 aa)
	A0A2C9WMJ7	Uncharacterized protein. (427 aa)
	A0A2C9WRY9	Uncharacterized protein. (342 aa)

Your Current Organism:

Manihot esculenta

NCBI taxonomy Id: 3983
Other names: M. esculenta, Manihot esculenta Crantz, Manihot utilissima, cassava, manioc, tapioca, yuca

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2C9UZM9	A0A2C9VC19	Uncharacterized protein.	Uncharacterized protein.	0.468
A0A2C9UZM9	A0A2C9VI92	Uncharacterized protein.	Uncharacterized protein.	0.450
A0A2C9UZM9	A0A2C9VS45	Uncharacterized protein.	Uncharacterized protein.	0.539
A0A2C9UZM9	A0A2C9VTB8	Uncharacterized protein.	Uncharacterized protein.	0.528
A0A2C9UZM9	A0A2C9W4R3	Uncharacterized protein.	C2 NT-type domain-containing protein.	0.427
A0A2C9UZM9	A0A2C9WLH9	Uncharacterized protein.	Uncharacterized protein.	0.454
A0A2C9UZM9	A0A2C9WMJ7	Uncharacterized protein.	Uncharacterized protein.	0.527
A0A2C9UZM9	A0A2C9WRY9	Uncharacterized protein.	Uncharacterized protein.	0.523
A0A2C9VC19	A0A2C9UZM9	Uncharacterized protein.	Uncharacterized protein.	0.468
A0A2C9VC19	A0A2C9VS45	Uncharacterized protein.	Uncharacterized protein.	0.462
A0A2C9VC19	A0A2C9VTB8	Uncharacterized protein.	Uncharacterized protein.	0.499
A0A2C9VC19	A0A2C9W3J2	Uncharacterized protein.	Uncharacterized protein.	0.479
A0A2C9VC19	A0A2C9W4R3	Uncharacterized protein.	C2 NT-type domain-containing protein.	0.513
A0A2C9VC19	A0A2C9WLH9	Uncharacterized protein.	Uncharacterized protein.	0.439
A0A2C9VC19	A0A2C9WMJ7	Uncharacterized protein.	Uncharacterized protein.	0.503
A0A2C9VC19	A0A2C9WRY9	Uncharacterized protein.	Uncharacterized protein.	0.455
A0A2C9VI92	A0A2C9UZM9	Uncharacterized protein.	Uncharacterized protein.	0.450
A0A2C9VI92	A0A2C9VS45	Uncharacterized protein.	Uncharacterized protein.	0.406
A0A2C9VI92	A0A2C9VTB8	Uncharacterized protein.	Uncharacterized protein.	0.406
A0A2C9VI92	A0A2C9W3J2	Uncharacterized protein.	Uncharacterized protein.	0.453