22 items (Manihot esculenta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A251J3Y9	Uncharacterized protein. (165 aa)
	A0A2C9U3Q0	Uncharacterized protein. (718 aa)
	A0A2C9U5D9	Uncharacterized protein. (632 aa)
	A0A2C9U8T3	Uncharacterized protein. (162 aa)
	A0A2C9UCP3	Uncharacterized protein. (603 aa)
	A0A2C9UCQ5	Uncharacterized protein. (461 aa)
	A0A2C9UZG5	GRAM domain-containing protein. (297 aa)
	A0A2C9V3X1	Uncharacterized protein. (222 aa)
	A0A2C9V431	Uncharacterized protein. (216 aa)
	A0A2C9V7C6	Uncharacterized protein. (1225 aa)
	A0A2C9V9N0	Uncharacterized protein. (183 aa)
	A0A2C9VA42	Uncharacterized protein. (234 aa)
	A0A2C9VJX0	Uncharacterized protein. (81 aa)
	A0A2C9VLY7	Uncharacterized protein. (131 aa)
	A0A2C9VPE2	BHLH domain-containing protein. (244 aa)
	A0A2C9VUE8	Uncharacterized protein. (480 aa)
	A0A2C9VVZ9	Uncharacterized protein. (428 aa)
	A0A2C9VW22	Uncharacterized protein. (170 aa)
	A0A2C9W6X2	Uncharacterized protein. (161 aa)
	A0A2C9W8E8	Uncharacterized protein. (465 aa)
	A0A2C9WBU6	Uncharacterized protein. (816 aa)
	A0A2C9WQS1	CCHC-type domain-containing protein. (467 aa)

Your Current Organism:

Manihot esculenta

NCBI taxonomy Id: 3983
Other names: M. esculenta, Manihot esculenta Crantz, Manihot utilissima, cassava, manioc, tapioca, yuca

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Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A251J3Y9	A0A2C9UCP3	Uncharacterized protein.	Uncharacterized protein.	0.443
A0A251J3Y9	A0A2C9UCQ5	Uncharacterized protein.	Uncharacterized protein.	0.454
A0A251J3Y9	A0A2C9UZG5	Uncharacterized protein.	GRAM domain-containing protein.	0.421
A0A251J3Y9	A0A2C9V7C6	Uncharacterized protein.	Uncharacterized protein.	0.463
A0A251J3Y9	A0A2C9VJX0	Uncharacterized protein.	Uncharacterized protein.	0.501
A0A251J3Y9	A0A2C9VLY7	Uncharacterized protein.	Uncharacterized protein.	0.467
A0A251J3Y9	A0A2C9VUE8	Uncharacterized protein.	Uncharacterized protein.	0.512
A0A251J3Y9	A0A2C9VW22	Uncharacterized protein.	Uncharacterized protein.	0.405
A0A251J3Y9	A0A2C9W8E8	Uncharacterized protein.	Uncharacterized protein.	0.432
A0A2C9U3Q0	A0A2C9U5D9	Uncharacterized protein.	Uncharacterized protein.	0.476
A0A2C9U3Q0	A0A2C9U8T3	Uncharacterized protein.	Uncharacterized protein.	0.499
A0A2C9U3Q0	A0A2C9UCP3	Uncharacterized protein.	Uncharacterized protein.	0.442
A0A2C9U3Q0	A0A2C9UCQ5	Uncharacterized protein.	Uncharacterized protein.	0.431
A0A2C9U3Q0	A0A2C9UZG5	Uncharacterized protein.	GRAM domain-containing protein.	0.488
A0A2C9U3Q0	A0A2C9VA42	Uncharacterized protein.	Uncharacterized protein.	0.500
A0A2C9U3Q0	A0A2C9VJX0	Uncharacterized protein.	Uncharacterized protein.	0.439
A0A2C9U3Q0	A0A2C9VUE8	Uncharacterized protein.	Uncharacterized protein.	0.480
A0A2C9U3Q0	A0A2C9VVZ9	Uncharacterized protein.	Uncharacterized protein.	0.523
A0A2C9U3Q0	A0A2C9W8E8	Uncharacterized protein.	Uncharacterized protein.	0.432
A0A2C9U3Q0	A0A2C9WBU6	Uncharacterized protein.	Uncharacterized protein.	0.449