(6 nodes) Mixed, incl. ASXL, HARE-HTH domain, and Autophagy-related protein 16 network (Manihot esculenta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2C9U6R4	Uncharacterized protein. (1686 aa)
	A0A2C9UAN7	Uncharacterized protein. (1448 aa)
	A0A2C9UUY0	WD_REPEATS_REGION domain-containing protein. (331 aa)
	A0A2C9UWC3	Uncharacterized protein. (1422 aa)
	A0A2C9VFQ6	Uncharacterized protein. (671 aa)
	A0A2C9W4U5	Uncharacterized protein. (1448 aa)

Your Current Organism:

Manihot esculenta

NCBI taxonomy Id: 3983
Other names: M. esculenta, Manihot esculenta Crantz, Manihot utilissima, cassava, manioc, tapioca, yuca

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2C9U6R4	A0A2C9UAN7	Uncharacterized protein.	Uncharacterized protein.	0.465
A0A2C9U6R4	A0A2C9W4U5	Uncharacterized protein.	Uncharacterized protein.	0.472
A0A2C9UAN7	A0A2C9U6R4	Uncharacterized protein.	Uncharacterized protein.	0.465
A0A2C9UAN7	A0A2C9UUY0	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.415
A0A2C9UAN7	A0A2C9UWC3	Uncharacterized protein.	Uncharacterized protein.	0.436
A0A2C9UAN7	A0A2C9VFQ6	Uncharacterized protein.	Uncharacterized protein.	0.598
A0A2C9UUY0	A0A2C9UAN7	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.415
A0A2C9UUY0	A0A2C9UWC3	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.811
A0A2C9UUY0	A0A2C9W4U5	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.413
A0A2C9UWC3	A0A2C9UAN7	Uncharacterized protein.	Uncharacterized protein.	0.436
A0A2C9UWC3	A0A2C9UUY0	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.811
A0A2C9UWC3	A0A2C9W4U5	Uncharacterized protein.	Uncharacterized protein.	0.440
A0A2C9VFQ6	A0A2C9UAN7	Uncharacterized protein.	Uncharacterized protein.	0.598
A0A2C9VFQ6	A0A2C9W4U5	Uncharacterized protein.	Uncharacterized protein.	0.594
A0A2C9W4U5	A0A2C9U6R4	Uncharacterized protein.	Uncharacterized protein.	0.472
A0A2C9W4U5	A0A2C9UUY0	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.413
A0A2C9W4U5	A0A2C9UWC3	Uncharacterized protein.	Uncharacterized protein.	0.440
A0A2C9W4U5	A0A2C9VFQ6	Uncharacterized protein.	Uncharacterized protein.	0.594