(94 nodes) RNA Polymerase II Transcription Termination, and Prespliceosome network (Manihot esculenta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MANES_S051200	RRM domain-containing protein. (197 aa)
	A0A251J1A6	Uncharacterized protein. (181 aa)
	A0A251J945	Uncharacterized protein. (351 aa)
	A0A251K595	Uncharacterized protein. (302 aa)
	A0A251KAD2	Uncharacterized protein. (313 aa)
	A0A251KGR2	Smg4_UPF3 domain-containing protein. (509 aa)
	A0A251L0L1	RRM domain-containing protein. (238 aa)
	A0A251LVE1	Uncharacterized protein. (245 aa)
	A0A2C9U0I6	Uncharacterized protein. (992 aa)
	A0A2C9U1W6	Uncharacterized protein. (811 aa)
	A0A2C9U3A7	Uncharacterized protein. (303 aa)
	A0A2C9U4Y1	DUF3700 domain-containing protein. (252 aa)
	A0A2C9U5G6	X8 domain-containing protein. (277 aa)
	A0A2C9U5L5	Uncharacterized protein. (1154 aa)
	A0A2C9U5T2	Helicase ATP-binding domain-containing protein. (1173 aa)
	A0A2C9U6B9	Uncharacterized protein. (1889 aa)
	A0A2C9U7L5	Uncharacterized protein. (437 aa)
	A0A2C9UAT1	RNA_GG_bind domain-containing protein. (263 aa)
	A0A2C9UAV4	Uncharacterized protein. (427 aa)
	A0A2C9UE36	DUF3700 domain-containing protein. (255 aa)
	A0A2C9UEN0	KH domain-containing protein. (837 aa)
	A0A2C9UEP6	RRM domain-containing protein. (245 aa)
	A0A2C9UG50	X8 domain-containing protein. (283 aa)
	A0A2C9UJD7	RRM domain-containing protein. (197 aa)
	A0A2C9UMC2	Uncharacterized protein. (420 aa)
	A0A2C9UMG1	RRM domain-containing protein. (257 aa)
	A0A2C9UNM8	Uncharacterized protein. (191 aa)
	A0A2C9UPY9	SAP domain-containing protein. (695 aa)
	A0A2C9UQD9	SAP domain-containing protein. (694 aa)
	A0A2C9UQN2	Uncharacterized protein. (834 aa)
	A0A2C9URM6	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (587 aa)
	A0A2C9UT90	Uncharacterized protein. (160 aa)
	A0A2C9UTN6	Uncharacterized protein. (412 aa)
	A0A2C9UTR8	Nuclear cap-binding protein subunit 2. (254 aa)
	A0A2C9UWH6	Uncharacterized protein. (1275 aa)
	A0A2C9UZW9	Uncharacterized protein. (428 aa)
	A0A2C9V034	Uncharacterized protein. (410 aa)
	A0A2C9V1L9	C2H2-type domain-containing protein. (744 aa)
	A0A2C9V1S9	Uncharacterized protein. (331 aa)
	A0A2C9V282	RRM domain-containing protein. (239 aa)
	A0A2C9V2W9	RRM domain-containing protein. (271 aa)
	A0A2C9V3Q0	Uncharacterized protein. (723 aa)
	A0A2C9V5J8	Uncharacterized protein. (140 aa)
	A0A2C9V5R2	Pinin_SDK_memA domain-containing protein. (427 aa)
	A0A2C9V6M0	Uncharacterized protein. (1028 aa)
	A0A2C9V6M7	Uncharacterized protein. (457 aa)
	A0A2C9V6U4	Uncharacterized protein. (560 aa)
	A0A2C9V881	Uncharacterized protein. (141 aa)
	A0A2C9V958	RRM domain-containing protein. (212 aa)
	A0A2C9V9N6	Uncharacterized protein. (695 aa)
	A0A2C9VA15	Uncharacterized protein. (203 aa)
	A0A2C9VBK3	Uncharacterized protein. (303 aa)
	A0A2C9VBS9	X8 domain-containing protein; Belongs to the glycosyl hydrolase 17 family. (602 aa)
	A0A2C9VC25	Uncharacterized protein. (196 aa)
	A0A2C9VDM2	Uncharacterized protein. (281 aa)
	A0A2C9VDY1	Uncharacterized protein. (240 aa)
	A0A2C9VHX1	Smg4_UPF3 domain-containing protein. (511 aa)
	A0A2C9VI91	RRM domain-containing protein. (197 aa)
	A0A2C9VK20	Uncharacterized protein. (1202 aa)
	A0A2C9VKG4	RRM domain-containing protein. (250 aa)
	A0A2C9VPB3	Uncharacterized protein. (538 aa)
	A0A2C9VPK2	Xpo1 domain-containing protein. (959 aa)
	A0A2C9VPX2	Uncharacterized protein. (795 aa)
	A0A2C9VS80	Uncharacterized protein. (372 aa)
	A0A2C9VSX3	RRM domain-containing protein. (198 aa)
	A0A2C9VTG4	MIF4G domain-containing protein. (869 aa)
	A0A2C9VTL8	Uncharacterized protein. (151 aa)
	A0A2C9VTV0	Uncharacterized protein. (297 aa)
	A0A2C9VUK3	Uncharacterized protein. (147 aa)
	A0A2C9VW84	F-box domain-containing protein. (331 aa)
	A0A2C9VX64	Uncharacterized protein. (280 aa)
	A0A2C9VZQ5	WD_REPEATS_REGION domain-containing protein. (313 aa)
	A0A2C9VZR3	Uncharacterized protein. (610 aa)
	A0A2C9W1L9	Uncharacterized protein. (330 aa)
	A0A2C9W2H3	Uncharacterized protein. (410 aa)
	A0A2C9W3M6	Uncharacterized protein. (428 aa)
	A0A2C9W4A9	Uncharacterized protein. (367 aa)
	A0A2C9W4L8	RNA_GG_bind domain-containing protein. (256 aa)
	A0A2C9W510	Uncharacterized protein. (608 aa)
	A0A2C9W5P2	Uncharacterized protein. (682 aa)
	A0A2C9W5V6	Uncharacterized protein. (192 aa)
	A0A2C9W8Y0	RRM domain-containing protein. (259 aa)
	A0A2C9WA48	Uncharacterized protein. (899 aa)
	A0A2C9WBV7	CCHC-type domain-containing protein. (632 aa)
	A0A2C9WDU7	RRM domain-containing protein. (506 aa)
	A0A2C9WE56	RRM domain-containing protein. (274 aa)
	A0A2C9WHF1	NAB domain-containing protein. (308 aa)
	A0A2C9WK31	Uncharacterized protein. (255 aa)
	A0A2C9WKM0	RRM domain-containing protein. (510 aa)
	A0A2C9WKZ6	RRM domain-containing protein. (296 aa)
	A0A2C9WLP9	X8 domain-containing protein. (238 aa)
	A0A2C9WM97	RRM domain-containing protein. (265 aa)
	A0A2C9WMV1	Uncharacterized protein. (264 aa)
	A0A2C9WPE6	Uncharacterized protein. (147 aa)

Your Current Organism:

Manihot esculenta

NCBI taxonomy Id: 3983
Other names: M. esculenta, Manihot esculenta Crantz, Manihot utilissima, cassava, manioc, tapioca, yuca

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A251J1A6	A0A251K595	A0A251J1A6	A0A251K595	Uncharacterized protein.	Uncharacterized protein.	0.531
A0A251J1A6	A0A251KAD2	A0A251J1A6	A0A251KAD2	Uncharacterized protein.	Uncharacterized protein.	0.505
A0A251J1A6	A0A251L0L1	A0A251J1A6	A0A251L0L1	Uncharacterized protein.	RRM domain-containing protein.	0.472
A0A251J1A6	A0A251LVE1	A0A251J1A6	A0A251LVE1	Uncharacterized protein.	Uncharacterized protein.	0.717
A0A251J1A6	A0A2C9U1W6	A0A251J1A6	A0A2C9U1W6	Uncharacterized protein.	Uncharacterized protein.	0.552
A0A251J1A6	A0A2C9U3A7	A0A251J1A6	A0A2C9U3A7	Uncharacterized protein.	Uncharacterized protein.	0.669
A0A251J1A6	A0A2C9U4Y1	A0A251J1A6	A0A2C9U4Y1	Uncharacterized protein.	DUF3700 domain-containing protein.	0.457
A0A251J1A6	A0A2C9U5G6	A0A251J1A6	A0A2C9U5G6	Uncharacterized protein.	X8 domain-containing protein.	0.457
A0A251J1A6	A0A2C9U6B9	A0A251J1A6	A0A2C9U6B9	Uncharacterized protein.	Uncharacterized protein.	0.541
A0A251J1A6	A0A2C9UAV4	A0A251J1A6	A0A2C9UAV4	Uncharacterized protein.	Uncharacterized protein.	0.511
A0A251J1A6	A0A2C9UE36	A0A251J1A6	A0A2C9UE36	Uncharacterized protein.	DUF3700 domain-containing protein.	0.457
A0A251J1A6	A0A2C9UEP6	A0A251J1A6	A0A2C9UEP6	Uncharacterized protein.	RRM domain-containing protein.	0.726
A0A251J1A6	A0A2C9UG50	A0A251J1A6	A0A2C9UG50	Uncharacterized protein.	X8 domain-containing protein.	0.457
A0A251J1A6	A0A2C9UJD7	A0A251J1A6	A0A2C9UJD7	Uncharacterized protein.	RRM domain-containing protein.	0.771
A0A251J1A6	A0A2C9UMG1	A0A251J1A6	A0A2C9UMG1	Uncharacterized protein.	RRM domain-containing protein.	0.949
A0A251J1A6	A0A2C9URM6	A0A251J1A6	A0A2C9URM6	Uncharacterized protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.457
A0A251J1A6	A0A2C9UTR8	A0A251J1A6	A0A2C9UTR8	Uncharacterized protein.	Nuclear cap-binding protein subunit 2.	0.682
A0A251J1A6	A0A2C9UWH6	A0A251J1A6	A0A2C9UWH6	Uncharacterized protein.	Uncharacterized protein.	0.533
A0A251J1A6	A0A2C9UZW9	A0A251J1A6	A0A2C9UZW9	Uncharacterized protein.	Uncharacterized protein.	0.511
A0A251J1A6	A0A2C9V034	A0A251J1A6	A0A2C9V034	Uncharacterized protein.	Uncharacterized protein.	0.653