(5 nodes) Transcription export complex network (Manihot esculenta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2C9U1W6	Uncharacterized protein. (811 aa)
	A0A2C9U6B9	Uncharacterized protein. (1889 aa)
	A0A2C9VDY1	Uncharacterized protein. (240 aa)
	A0A2C9VZQ5	WD_REPEATS_REGION domain-containing protein. (313 aa)
	A0A2C9W510	Uncharacterized protein. (608 aa)

Your Current Organism:

Manihot esculenta

NCBI taxonomy Id: 3983
Other names: M. esculenta, Manihot esculenta Crantz, Manihot utilissima, cassava, manioc, tapioca, yuca

Send network to Cytoscape

Export your current network:

... as a bitmap image:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2C9U1W6	A0A2C9U6B9	Uncharacterized protein.	Uncharacterized protein.	0.997
A0A2C9U1W6	A0A2C9VDY1	Uncharacterized protein.	Uncharacterized protein.	0.998
A0A2C9U1W6	A0A2C9VZQ5	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.998
A0A2C9U1W6	A0A2C9W510	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A2C9U6B9	A0A2C9U1W6	Uncharacterized protein.	Uncharacterized protein.	0.997
A0A2C9U6B9	A0A2C9VDY1	Uncharacterized protein.	Uncharacterized protein.	0.996
A0A2C9U6B9	A0A2C9VZQ5	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.999
A0A2C9U6B9	A0A2C9W510	Uncharacterized protein.	Uncharacterized protein.	0.998
A0A2C9VDY1	A0A2C9U1W6	Uncharacterized protein.	Uncharacterized protein.	0.998
A0A2C9VDY1	A0A2C9U6B9	Uncharacterized protein.	Uncharacterized protein.	0.996
A0A2C9VDY1	A0A2C9VZQ5	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.998
A0A2C9VDY1	A0A2C9W510	Uncharacterized protein.	Uncharacterized protein.	0.998
A0A2C9VZQ5	A0A2C9U1W6	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.998
A0A2C9VZQ5	A0A2C9U6B9	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.999
A0A2C9VZQ5	A0A2C9VDY1	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.998
A0A2C9VZQ5	A0A2C9W510	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.998
A0A2C9W510	A0A2C9U1W6	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A2C9W510	A0A2C9U6B9	Uncharacterized protein.	Uncharacterized protein.	0.998
A0A2C9W510	A0A2C9VDY1	Uncharacterized protein.	Uncharacterized protein.	0.998
A0A2C9W510	A0A2C9VZQ5	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.998