(11 nodes) Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay network (Manihot esculenta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MANES_S051200	RRM domain-containing protein. (197 aa)
	A0A251KGR2	Smg4_UPF3 domain-containing protein. (509 aa)
	A0A2C9U5T2	Helicase ATP-binding domain-containing protein. (1173 aa)
	A0A2C9UJD7	RRM domain-containing protein. (197 aa)
	A0A2C9V034	Uncharacterized protein. (410 aa)
	A0A2C9VHX1	Smg4_UPF3 domain-containing protein. (511 aa)
	A0A2C9VK20	Uncharacterized protein. (1202 aa)
	A0A2C9VKG4	RRM domain-containing protein. (250 aa)
	A0A2C9VSX3	RRM domain-containing protein. (198 aa)
	A0A2C9VTL8	Uncharacterized protein. (151 aa)
	A0A2C9W2H3	Uncharacterized protein. (410 aa)

Your Current Organism:

Manihot esculenta

NCBI taxonomy Id: 3983
Other names: M. esculenta, Manihot esculenta Crantz, Manihot utilissima, cassava, manioc, tapioca, yuca

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A251KGR2	A0A2C9U5T2	A0A251KGR2	A0A2C9U5T2	Smg4_UPF3 domain-containing protein.	Helicase ATP-binding domain-containing protein.	0.985
A0A251KGR2	A0A2C9UJD7	A0A251KGR2	A0A2C9UJD7	Smg4_UPF3 domain-containing protein.	RRM domain-containing protein.	0.954
A0A251KGR2	A0A2C9V034	A0A251KGR2	A0A2C9V034	Smg4_UPF3 domain-containing protein.	Uncharacterized protein.	0.942
A0A251KGR2	A0A2C9VHX1	A0A251KGR2	A0A2C9VHX1	Smg4_UPF3 domain-containing protein.	Smg4_UPF3 domain-containing protein.	0.900
A0A251KGR2	A0A2C9VK20	A0A251KGR2	A0A2C9VK20	Smg4_UPF3 domain-containing protein.	Uncharacterized protein.	0.998
A0A251KGR2	A0A2C9VKG4	A0A251KGR2	A0A2C9VKG4	Smg4_UPF3 domain-containing protein.	RRM domain-containing protein.	0.844
A0A251KGR2	A0A2C9VSX3	A0A251KGR2	A0A2C9VSX3	Smg4_UPF3 domain-containing protein.	RRM domain-containing protein.	0.954
A0A251KGR2	A0A2C9VTL8	A0A251KGR2	A0A2C9VTL8	Smg4_UPF3 domain-containing protein.	Uncharacterized protein.	0.996
A0A251KGR2	A0A2C9W2H3	A0A251KGR2	A0A2C9W2H3	Smg4_UPF3 domain-containing protein.	Uncharacterized protein.	0.942
A0A251KGR2	MANES_S051200	A0A251KGR2	A0A199UB38	Smg4_UPF3 domain-containing protein.	RRM domain-containing protein.	0.784
A0A2C9U5T2	A0A251KGR2	A0A2C9U5T2	A0A251KGR2	Helicase ATP-binding domain-containing protein.	Smg4_UPF3 domain-containing protein.	0.985
A0A2C9U5T2	A0A2C9UJD7	A0A2C9U5T2	A0A2C9UJD7	Helicase ATP-binding domain-containing protein.	RRM domain-containing protein.	0.962
A0A2C9U5T2	A0A2C9V034	A0A2C9U5T2	A0A2C9V034	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.857
A0A2C9U5T2	A0A2C9VHX1	A0A2C9U5T2	A0A2C9VHX1	Helicase ATP-binding domain-containing protein.	Smg4_UPF3 domain-containing protein.	0.985
A0A2C9U5T2	A0A2C9VK20	A0A2C9U5T2	A0A2C9VK20	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.995
A0A2C9U5T2	A0A2C9VKG4	A0A2C9U5T2	A0A2C9VKG4	Helicase ATP-binding domain-containing protein.	RRM domain-containing protein.	0.808
A0A2C9U5T2	A0A2C9VSX3	A0A2C9U5T2	A0A2C9VSX3	Helicase ATP-binding domain-containing protein.	RRM domain-containing protein.	0.962
A0A2C9U5T2	A0A2C9VTL8	A0A2C9U5T2	A0A2C9VTL8	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.892
A0A2C9U5T2	A0A2C9W2H3	A0A2C9U5T2	A0A2C9W2H3	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.857
A0A2C9U5T2	MANES_S051200	A0A2C9U5T2	A0A199UB38	Helicase ATP-binding domain-containing protein.	RRM domain-containing protein.	0.837