(15 nodes) Anaphase-promoting complex-dependent catabolic process network (Manihot esculenta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A251K9C5	RING-type domain-containing protein. (72 aa)
	A0A251KJL1	APC1_C domain-containing protein. (1825 aa)
	A0A251LGC5	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. (192 aa)
	A0A251LR11	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. (192 aa)
	A0A2C9UAW3	Uncharacterized protein. (756 aa)
	A0A2C9UC83	Uncharacterized protein. (596 aa)
	A0A2C9UEC7	TPR_REGION domain-containing protein. (544 aa)
	A0A2C9UEH2	WD_REPEATS_REGION domain-containing protein. (772 aa)
	A0A2C9UKK5	TPR_REGION domain-containing protein. (577 aa)
	A0A2C9VF79	RING-type domain-containing protein. (57 aa)
	A0A2C9VN22	WD_REPEATS_REGION domain-containing protein. (485 aa)
	A0A2C9W5C9	Uncharacterized protein. (760 aa)
	A0A2C9WHG2	CULLIN_2 domain-containing protein; Belongs to the cullin family. (880 aa)
	A0A2C9WIK6	WD_REPEATS_REGION domain-containing protein. (485 aa)
	A0A2C9WK60	ANAPC5 domain-containing protein. (914 aa)

Your Current Organism:

Manihot esculenta

NCBI taxonomy Id: 3983
Other names: M. esculenta, Manihot esculenta Crantz, Manihot utilissima, cassava, manioc, tapioca, yuca

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A251K9C5	A0A251KJL1	RING-type domain-containing protein.	APC1_C domain-containing protein.	0.995
A0A251K9C5	A0A251LGC5	RING-type domain-containing protein.	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.	0.987
A0A251K9C5	A0A251LR11	RING-type domain-containing protein.	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.	0.987
A0A251K9C5	A0A2C9UAW3	RING-type domain-containing protein.	Uncharacterized protein.	0.973
A0A251K9C5	A0A2C9UC83	RING-type domain-containing protein.	Uncharacterized protein.	0.976
A0A251K9C5	A0A2C9UEC7	RING-type domain-containing protein.	TPR_REGION domain-containing protein.	0.995
A0A251K9C5	A0A2C9UEH2	RING-type domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.995
A0A251K9C5	A0A2C9UKK5	RING-type domain-containing protein.	TPR_REGION domain-containing protein.	0.983
A0A251K9C5	A0A2C9VF79	RING-type domain-containing protein.	RING-type domain-containing protein.	0.548
A0A251K9C5	A0A2C9VN22	RING-type domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.923
A0A251K9C5	A0A2C9W5C9	RING-type domain-containing protein.	Uncharacterized protein.	0.973
A0A251K9C5	A0A2C9WHG2	RING-type domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.995
A0A251K9C5	A0A2C9WIK6	RING-type domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.908
A0A251K9C5	A0A2C9WK60	RING-type domain-containing protein.	ANAPC5 domain-containing protein.	0.995
A0A251KJL1	A0A251K9C5	APC1_C domain-containing protein.	RING-type domain-containing protein.	0.995
A0A251KJL1	A0A251LGC5	APC1_C domain-containing protein.	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.	0.995
A0A251KJL1	A0A251LR11	APC1_C domain-containing protein.	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.	0.995
A0A251KJL1	A0A2C9UAW3	APC1_C domain-containing protein.	Uncharacterized protein.	0.987
A0A251KJL1	A0A2C9UC83	APC1_C domain-containing protein.	Uncharacterized protein.	0.997
A0A251KJL1	A0A2C9UEC7	APC1_C domain-containing protein.	TPR_REGION domain-containing protein.	0.998