(10 nodes) Mixed, incl. NMS complex, and Spindle elongation network (Manihot esculenta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A251JJM4	Uncharacterized protein. (524 aa)
	A0A251LCH7	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (811 aa)
	A0A2C9U1R4	CXC domain-containing protein. (445 aa)
	A0A2C9U294	Protein kinase domain-containing protein. (750 aa)
	A0A2C9V3W1	Uncharacterized protein. (438 aa)
	A0A2C9V9C3	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1617 aa)
	A0A2C9VHI3	Uncharacterized protein. (579 aa)
	A0A2C9VPU7	AAA domain-containing protein; Belongs to the AAA ATPase family. (457 aa)
	A0A2C9VRB1	Uncharacterized protein. (296 aa)
	A0A2C9VTD8	Uncharacterized protein. (269 aa)

Your Current Organism:

Manihot esculenta

NCBI taxonomy Id: 3983
Other names: M. esculenta, Manihot esculenta Crantz, Manihot utilissima, cassava, manioc, tapioca, yuca

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A251JJM4	A0A251LCH7	Uncharacterized protein.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.612
A0A251JJM4	A0A2C9U1R4	Uncharacterized protein.	CXC domain-containing protein.	0.535
A0A251JJM4	A0A2C9U294	Uncharacterized protein.	Protein kinase domain-containing protein.	0.836
A0A251JJM4	A0A2C9V3W1	Uncharacterized protein.	Uncharacterized protein.	0.952
A0A251JJM4	A0A2C9V9C3	Uncharacterized protein.	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.650
A0A251JJM4	A0A2C9VHI3	Uncharacterized protein.	Uncharacterized protein.	0.974
A0A251JJM4	A0A2C9VPU7	Uncharacterized protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.639
A0A251JJM4	A0A2C9VRB1	Uncharacterized protein.	Uncharacterized protein.	0.856
A0A251JJM4	A0A2C9VTD8	Uncharacterized protein.	Uncharacterized protein.	0.728
A0A251LCH7	A0A251JJM4	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Uncharacterized protein.	0.612
A0A251LCH7	A0A2C9U1R4	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	CXC domain-containing protein.	0.557
A0A251LCH7	A0A2C9U294	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Protein kinase domain-containing protein.	0.455
A0A251LCH7	A0A2C9V3W1	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Uncharacterized protein.	0.526
A0A251LCH7	A0A2C9V9C3	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.582
A0A251LCH7	A0A2C9VHI3	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Uncharacterized protein.	0.565
A0A251LCH7	A0A2C9VRB1	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Uncharacterized protein.	0.415
A0A2C9U1R4	A0A251JJM4	CXC domain-containing protein.	Uncharacterized protein.	0.535
A0A2C9U1R4	A0A251LCH7	CXC domain-containing protein.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.557
A0A2C9U1R4	A0A2C9U294	CXC domain-containing protein.	Protein kinase domain-containing protein.	0.498
A0A2C9U1R4	A0A2C9V3W1	CXC domain-containing protein.	Uncharacterized protein.	0.789