(5 nodes) Nuclear pore inner ring, and Protein localization to nuclear envelope network (Manihot esculenta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2C9U619	Nucleoporin_N domain-containing protein. (1493 aa)
	A0A2C9UN28	Nup54 domain-containing protein. (401 aa)
	A0A2C9UYZ6	Nuclear pore protein. (806 aa)
	A0A2C9VVI7	Uncharacterized protein. (1883 aa)
	A0A2C9W1Y5	Uncharacterized protein. (1974 aa)

Your Current Organism:

Manihot esculenta

NCBI taxonomy Id: 3983
Other names: M. esculenta, Manihot esculenta Crantz, Manihot utilissima, cassava, manioc, tapioca, yuca

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2C9U619	A0A2C9UN28	Nucleoporin_N domain-containing protein.	Nup54 domain-containing protein.	0.996
A0A2C9U619	A0A2C9UYZ6	Nucleoporin_N domain-containing protein.	Nuclear pore protein.	0.997
A0A2C9U619	A0A2C9VVI7	Nucleoporin_N domain-containing protein.	Uncharacterized protein.	0.999
A0A2C9U619	A0A2C9W1Y5	Nucleoporin_N domain-containing protein.	Uncharacterized protein.	0.998
A0A2C9UN28	A0A2C9U619	Nup54 domain-containing protein.	Nucleoporin_N domain-containing protein.	0.996
A0A2C9UN28	A0A2C9UYZ6	Nup54 domain-containing protein.	Nuclear pore protein.	0.996
A0A2C9UN28	A0A2C9VVI7	Nup54 domain-containing protein.	Uncharacterized protein.	0.996
A0A2C9UN28	A0A2C9W1Y5	Nup54 domain-containing protein.	Uncharacterized protein.	0.995
A0A2C9UYZ6	A0A2C9U619	Nuclear pore protein.	Nucleoporin_N domain-containing protein.	0.997
A0A2C9UYZ6	A0A2C9UN28	Nuclear pore protein.	Nup54 domain-containing protein.	0.996
A0A2C9UYZ6	A0A2C9VVI7	Nuclear pore protein.	Uncharacterized protein.	0.999
A0A2C9UYZ6	A0A2C9W1Y5	Nuclear pore protein.	Uncharacterized protein.	0.999
A0A2C9VVI7	A0A2C9U619	Uncharacterized protein.	Nucleoporin_N domain-containing protein.	0.999
A0A2C9VVI7	A0A2C9UN28	Uncharacterized protein.	Nup54 domain-containing protein.	0.996
A0A2C9VVI7	A0A2C9UYZ6	Uncharacterized protein.	Nuclear pore protein.	0.999
A0A2C9VVI7	A0A2C9W1Y5	Uncharacterized protein.	Uncharacterized protein.	0.998
A0A2C9W1Y5	A0A2C9U619	Uncharacterized protein.	Nucleoporin_N domain-containing protein.	0.998
A0A2C9W1Y5	A0A2C9UN28	Uncharacterized protein.	Nup54 domain-containing protein.	0.995
A0A2C9W1Y5	A0A2C9UYZ6	Uncharacterized protein.	Nuclear pore protein.	0.999
A0A2C9W1Y5	A0A2C9VVI7	Uncharacterized protein.	Uncharacterized protein.	0.998