(31 nodes) Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay network (Manihot esculenta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2C9VTL8	Uncharacterized protein. (151 aa)
	A0A251IXZ8	Uncharacterized protein. (1019 aa)
	A0A251KGR2	Smg4_UPF3 domain-containing protein. (509 aa)
	A0A251L3J1	Btz domain-containing protein. (734 aa)
	A0A2C9WLC4	Uncharacterized protein. (1342 aa)
	A0A251LIP9	Uncharacterized protein. (978 aa)
	A0A251LT28	Uncharacterized protein. (977 aa)
	A0A2C9TZ93	Uncharacterized protein. (680 aa)
	A0A2C9TZY3	Uncharacterized protein. (506 aa)
	A0A2C9U5T2	Helicase ATP-binding domain-containing protein. (1173 aa)
	A0A2C9U5U0	Uncharacterized protein. (996 aa)
	A0A2C9W721	Uncharacterized protein. (1148 aa)
	A0A2C9U6H7	Uncharacterized protein. (907 aa)
	A0A2C9U855	Uncharacterized protein. (965 aa)
	A0A2C9UH63	Uncharacterized protein; Belongs to the DEAD box helicase family. (620 aa)
	A0A2C9UJD7	RRM domain-containing protein. (197 aa)
	A0A2C9UMJ9	Uncharacterized protein. (543 aa)
	A0A2C9UXY0	Uncharacterized protein; Belongs to the DEAD box helicase family. (505 aa)
	A0A2C9UYI1	Btz domain-containing protein. (698 aa)
	A0A2C9V034	Uncharacterized protein. (410 aa)
	A0A2C9V5Q4	Mago-bind domain-containing protein. (246 aa)
	A0A2C9VA80	Uncharacterized protein. (407 aa)
	A0A2C9VHL4	Mago-bind domain-containing protein. (233 aa)
	A0A2C9VHX1	Smg4_UPF3 domain-containing protein. (511 aa)
	A0A2C9VK20	Uncharacterized protein. (1202 aa)
	A0A2C9VLN6	Nudix hydrolase domain-containing protein. (324 aa)
	A0A2C9W2H3	Uncharacterized protein. (410 aa)
	A0A2C9VS56	Uncharacterized protein; Belongs to the DEAD box helicase family. (632 aa)
	A0A2C9VYN9	Uncharacterized protein. (1214 aa)
	A0A2C9VSX3	RRM domain-containing protein. (198 aa)
	A0A2C9VTG4	MIF4G domain-containing protein. (869 aa)

Your Current Organism:

Manihot esculenta

NCBI taxonomy Id: 3983
Other names: M. esculenta, Manihot esculenta Crantz, Manihot utilissima, cassava, manioc, tapioca, yuca

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A251IXZ8	A0A251KGR2	Uncharacterized protein.	Smg4_UPF3 domain-containing protein.	0.867
A0A251IXZ8	A0A251LIP9	Uncharacterized protein.	Uncharacterized protein.	0.548
A0A251IXZ8	A0A251LT28	Uncharacterized protein.	Uncharacterized protein.	0.548
A0A251IXZ8	A0A2C9U5T2	Uncharacterized protein.	Helicase ATP-binding domain-containing protein.	0.956
A0A251IXZ8	A0A2C9U5U0	Uncharacterized protein.	Uncharacterized protein.	0.545
A0A251IXZ8	A0A2C9UJD7	Uncharacterized protein.	RRM domain-containing protein.	0.805
A0A251IXZ8	A0A2C9VA80	Uncharacterized protein.	Uncharacterized protein.	0.688
A0A251IXZ8	A0A2C9VHX1	Uncharacterized protein.	Smg4_UPF3 domain-containing protein.	0.867
A0A251IXZ8	A0A2C9VK20	Uncharacterized protein.	Uncharacterized protein.	0.680
A0A251IXZ8	A0A2C9VLN6	Uncharacterized protein.	Nudix hydrolase domain-containing protein.	0.436
A0A251IXZ8	A0A2C9VSX3	Uncharacterized protein.	RRM domain-containing protein.	0.805
A0A251IXZ8	A0A2C9VTG4	Uncharacterized protein.	MIF4G domain-containing protein.	0.802
A0A251IXZ8	A0A2C9VTL8	Uncharacterized protein.	Uncharacterized protein.	0.638
A0A251IXZ8	A0A2C9VYN9	Uncharacterized protein.	Uncharacterized protein.	0.676
A0A251KGR2	A0A251IXZ8	Smg4_UPF3 domain-containing protein.	Uncharacterized protein.	0.867
A0A251KGR2	A0A251LIP9	Smg4_UPF3 domain-containing protein.	Uncharacterized protein.	0.912
A0A251KGR2	A0A251LT28	Smg4_UPF3 domain-containing protein.	Uncharacterized protein.	0.912
A0A251KGR2	A0A2C9U5T2	Smg4_UPF3 domain-containing protein.	Helicase ATP-binding domain-containing protein.	0.985
A0A251KGR2	A0A2C9U5U0	Smg4_UPF3 domain-containing protein.	Uncharacterized protein.	0.867
A0A251KGR2	A0A2C9UH63	Smg4_UPF3 domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.555