(23 nodes) Cytoplasmic stress granule network (Manihot esculenta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MANES_S049000	Uncharacterized protein. (387 aa)
	A0A251JRN9	LsmAD domain-containing protein. (634 aa)
	A0A251L2N2	Uncharacterized protein. (540 aa)
	A0A2C9TZJ9	HTH La-type RNA-binding domain-containing protein. (534 aa)
	A0A2C9U131	Uncharacterized protein. (432 aa)
	A0A2C9UDZ9	SM-ATX domain-containing protein. (562 aa)
	A0A2C9UHP3	Uncharacterized protein. (416 aa)
	A0A2C9UIE7	Ribonuclease; Cytoprotective ribonuclease (RNase) required for resistance to abiotic stresses, acting as a positive regulator of mRNA decapping during stress. (989 aa)
	A0A2C9UMT5	Uncharacterized protein. (104 aa)
	A0A2C9UTH1	Uncharacterized protein. (104 aa)
	A0A2C9VCK1	Uncharacterized protein. (501 aa)
	A0A2C9VHF3	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. Acts as an endogenous post-transcriptional gene silencing (PTGS) suppressor. (960 aa)
	A0A2C9VQF5	Ribonuclease; Cytoprotective ribonuclease (RNase) required for resistance to abiotic stresses, acting as a positive regulator of mRNA decapping during stress. (988 aa)
	A0A2C9VSX1	2-Hacid_dh_C domain-containing protein. (933 aa)
	A0A2C9VT15	Uncharacterized protein; Belongs to the DEAD box helicase family. (492 aa)
	A0A2C9VVQ8	Uncharacterized protein. (250 aa)
	A0A2C9VW89	HTH La-type RNA-binding domain-containing protein. (359 aa)
	A0A2C9VWX3	Uncharacterized protein. (1178 aa)
	A0A2C9VY80	Uncharacterized protein. (443 aa)
	A0A2C9W2D8	LsmAD domain-containing protein. (632 aa)
	A0A2C9W756	SM-ATX domain-containing protein. (547 aa)
	A0A2C9WNZ2	2-Hacid_dh_C domain-containing protein. (643 aa)
	A0A2C9WP56	Uncharacterized protein; Belongs to the DEAD box helicase family. (657 aa)

Your Current Organism:

Manihot esculenta

NCBI taxonomy Id: 3983
Other names: M. esculenta, Manihot esculenta Crantz, Manihot utilissima, cassava, manioc, tapioca, yuca

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A251JRN9	A0A2C9VT15	LsmAD domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.907
A0A251JRN9	A0A2C9WP56	LsmAD domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.907
A0A251L2N2	A0A2C9VWX3	Uncharacterized protein.	Uncharacterized protein.	0.520
A0A2C9UIE7	A0A2C9VT15	Ribonuclease; Cytoprotective ribonuclease (RNase) required for resistance to abiotic stresses, acting as a positive regulator of mRNA decapping during stress.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.454
A0A2C9UIE7	A0A2C9WP56	Ribonuclease; Cytoprotective ribonuclease (RNase) required for resistance to abiotic stresses, acting as a positive regulator of mRNA decapping during stress.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.454
A0A2C9VHF3	A0A2C9VWX3	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. Acts as an endogenous post-transcriptional gene silencing (PTGS) suppressor.	Uncharacterized protein.	0.487
A0A2C9VQF5	A0A2C9VT15	Ribonuclease; Cytoprotective ribonuclease (RNase) required for resistance to abiotic stresses, acting as a positive regulator of mRNA decapping during stress.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.454
A0A2C9VQF5	A0A2C9WP56	Ribonuclease; Cytoprotective ribonuclease (RNase) required for resistance to abiotic stresses, acting as a positive regulator of mRNA decapping during stress.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.454
A0A2C9VT15	A0A251JRN9	Uncharacterized protein; Belongs to the DEAD box helicase family.	LsmAD domain-containing protein.	0.907
A0A2C9VT15	A0A2C9UIE7	Uncharacterized protein; Belongs to the DEAD box helicase family.	Ribonuclease; Cytoprotective ribonuclease (RNase) required for resistance to abiotic stresses, acting as a positive regulator of mRNA decapping during stress.	0.454
A0A2C9VT15	A0A2C9VQF5	Uncharacterized protein; Belongs to the DEAD box helicase family.	Ribonuclease; Cytoprotective ribonuclease (RNase) required for resistance to abiotic stresses, acting as a positive regulator of mRNA decapping during stress.	0.454
A0A2C9VT15	A0A2C9VWX3	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.523
A0A2C9VT15	A0A2C9W2D8	Uncharacterized protein; Belongs to the DEAD box helicase family.	LsmAD domain-containing protein.	0.907
A0A2C9VT15	A0A2C9WP56	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.901
A0A2C9VWX3	A0A251L2N2	Uncharacterized protein.	Uncharacterized protein.	0.520
A0A2C9VWX3	A0A2C9VHF3	Uncharacterized protein.	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. Acts as an endogenous post-transcriptional gene silencing (PTGS) suppressor.	0.487
A0A2C9VWX3	A0A2C9VT15	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.523
A0A2C9VWX3	A0A2C9WP56	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.523
A0A2C9W2D8	A0A2C9VT15	LsmAD domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.907
A0A2C9W2D8	A0A2C9WP56	LsmAD domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.907