(16 nodes) Long-day photoperiodism network (Manihot esculenta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2C9W1B9	Peptidase S59 domain-containing protein. (1068 aa)
	A0A251IUL7	Uncharacterized protein. (479 aa)
	A0A251JN44	Uncharacterized protein. (470 aa)
	A0A251KGR2	Smg4_UPF3 domain-containing protein. (509 aa)
	A0A251LUQ0	HTH myb-type domain-containing protein. (756 aa)
	A0A2C9U5T2	Helicase ATP-binding domain-containing protein. (1173 aa)
	A0A2C9U8K0	Uncharacterized protein. (481 aa)
	A0A2C9UCX8	Photolyase/cryptochrome alpha/beta domain-containing protein. (644 aa)
	A0A2C9UFT2	Protein kinase domain-containing protein. (721 aa)
	A0A2C9UZH4	Uncharacterized protein. (932 aa)
	A0A2C9VHX1	Smg4_UPF3 domain-containing protein. (511 aa)
	A0A2C9VK20	Uncharacterized protein. (1202 aa)
	A0A2C9VQK3	Uncharacterized protein. (940 aa)
	A0A2C9VTG4	MIF4G domain-containing protein. (869 aa)
	A0A2C9W2T2	Uncharacterized protein. (1360 aa)
	A0A2C9VTV8	HTH myb-type domain-containing protein. (742 aa)

Your Current Organism:

Manihot esculenta

NCBI taxonomy Id: 3983
Other names: M. esculenta, Manihot esculenta Crantz, Manihot utilissima, cassava, manioc, tapioca, yuca

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A251KGR2	A0A2C9U5T2	Smg4_UPF3 domain-containing protein.	Helicase ATP-binding domain-containing protein.	0.985
A0A251KGR2	A0A2C9VHX1	Smg4_UPF3 domain-containing protein.	Smg4_UPF3 domain-containing protein.	0.900
A0A251KGR2	A0A2C9VK20	Smg4_UPF3 domain-containing protein.	Uncharacterized protein.	0.998
A0A251KGR2	A0A2C9VTG4	Smg4_UPF3 domain-containing protein.	MIF4G domain-containing protein.	0.863
A0A251KGR2	A0A2C9W1B9	Smg4_UPF3 domain-containing protein.	Peptidase S59 domain-containing protein.	0.496
A0A251LUQ0	A0A2C9UCX8	HTH myb-type domain-containing protein.	Photolyase/cryptochrome alpha/beta domain-containing protein.	0.429
A0A251LUQ0	A0A2C9VTV8	HTH myb-type domain-containing protein.	HTH myb-type domain-containing protein.	0.901
A0A2C9U5T2	A0A251KGR2	Helicase ATP-binding domain-containing protein.	Smg4_UPF3 domain-containing protein.	0.985
A0A2C9U5T2	A0A2C9VHX1	Helicase ATP-binding domain-containing protein.	Smg4_UPF3 domain-containing protein.	0.985
A0A2C9U5T2	A0A2C9VK20	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.995
A0A2C9U5T2	A0A2C9VTG4	Helicase ATP-binding domain-containing protein.	MIF4G domain-containing protein.	0.954
A0A2C9UCX8	A0A251LUQ0	Photolyase/cryptochrome alpha/beta domain-containing protein.	HTH myb-type domain-containing protein.	0.429
A0A2C9UCX8	A0A2C9VTV8	Photolyase/cryptochrome alpha/beta domain-containing protein.	HTH myb-type domain-containing protein.	0.429
A0A2C9UZH4	A0A2C9VQK3	Uncharacterized protein.	Uncharacterized protein.	0.593
A0A2C9UZH4	A0A2C9W2T2	Uncharacterized protein.	Uncharacterized protein.	0.548
A0A2C9VHX1	A0A251KGR2	Smg4_UPF3 domain-containing protein.	Smg4_UPF3 domain-containing protein.	0.900
A0A2C9VHX1	A0A2C9U5T2	Smg4_UPF3 domain-containing protein.	Helicase ATP-binding domain-containing protein.	0.985
A0A2C9VHX1	A0A2C9VK20	Smg4_UPF3 domain-containing protein.	Uncharacterized protein.	0.998
A0A2C9VHX1	A0A2C9VTG4	Smg4_UPF3 domain-containing protein.	MIF4G domain-containing protein.	0.863
A0A2C9VHX1	A0A2C9W1B9	Smg4_UPF3 domain-containing protein.	Peptidase S59 domain-containing protein.	0.496