(12 nodes) Long-day photoperiodism, flowering network (Manihot esculenta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2C9VTV8	HTH myb-type domain-containing protein. (742 aa)
	A0A251IUL7	Uncharacterized protein. (479 aa)
	A0A251JN44	Uncharacterized protein. (470 aa)
	A0A251LUQ0	HTH myb-type domain-containing protein. (756 aa)
	A0A2C9U8K0	Uncharacterized protein. (481 aa)
	A0A2C9UCX8	Photolyase/cryptochrome alpha/beta domain-containing protein. (644 aa)
	A0A2C9UFT2	Protein kinase domain-containing protein. (721 aa)
	A0A2C9UZH4	Uncharacterized protein. (932 aa)
	A0A2C9W1B9	Peptidase S59 domain-containing protein. (1068 aa)
	A0A2C9W2T2	Uncharacterized protein. (1360 aa)
	A0A2C9VQK3	Uncharacterized protein. (940 aa)
	A0A2C9VTG4	MIF4G domain-containing protein. (869 aa)

Your Current Organism:

Manihot esculenta

NCBI taxonomy Id: 3983
Other names: M. esculenta, Manihot esculenta Crantz, Manihot utilissima, cassava, manioc, tapioca, yuca

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A251LUQ0	A0A2C9UCX8	HTH myb-type domain-containing protein.	Photolyase/cryptochrome alpha/beta domain-containing protein.	0.429
A0A251LUQ0	A0A2C9VTV8	HTH myb-type domain-containing protein.	HTH myb-type domain-containing protein.	0.901
A0A2C9UCX8	A0A251LUQ0	Photolyase/cryptochrome alpha/beta domain-containing protein.	HTH myb-type domain-containing protein.	0.429
A0A2C9UCX8	A0A2C9VTV8	Photolyase/cryptochrome alpha/beta domain-containing protein.	HTH myb-type domain-containing protein.	0.429
A0A2C9UZH4	A0A2C9VQK3	Uncharacterized protein.	Uncharacterized protein.	0.593
A0A2C9UZH4	A0A2C9W2T2	Uncharacterized protein.	Uncharacterized protein.	0.548
A0A2C9VQK3	A0A2C9UZH4	Uncharacterized protein.	Uncharacterized protein.	0.593
A0A2C9VQK3	A0A2C9W2T2	Uncharacterized protein.	Uncharacterized protein.	0.592
A0A2C9VTG4	A0A2C9W1B9	MIF4G domain-containing protein.	Peptidase S59 domain-containing protein.	0.663
A0A2C9VTV8	A0A251LUQ0	HTH myb-type domain-containing protein.	HTH myb-type domain-containing protein.	0.901
A0A2C9VTV8	A0A2C9UCX8	HTH myb-type domain-containing protein.	Photolyase/cryptochrome alpha/beta domain-containing protein.	0.429
A0A2C9W1B9	A0A2C9VTG4	Peptidase S59 domain-containing protein.	MIF4G domain-containing protein.	0.663
A0A2C9W2T2	A0A2C9UZH4	Uncharacterized protein.	Uncharacterized protein.	0.548
A0A2C9W2T2	A0A2C9VQK3	Uncharacterized protein.	Uncharacterized protein.	0.592