(55 nodes) Small regulatory ncRNA processing network (Manihot esculenta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2C9VH18	Uncharacterized protein. (160 aa)
	A0A2C9UBD8	Uncharacterized protein. (1281 aa)
	A0A2C9UBI6	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1204 aa)
	A0A2C9UDU2	Uncharacterized protein. (365 aa)
	A0A2C9UEX4	FHA domain-containing protein. (178 aa)
	A0A2C9UFK1	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family. (1132 aa)
	A0A2C9UMK9	Uncharacterized protein. (993 aa)
	A0A2C9UMR4	Uncharacterized protein. (480 aa)
	A0A2C9UQE5	Uncharacterized protein. (213 aa)
	A0A2C9UQN6	RNase III domain-containing protein. (264 aa)
	A0A2C9US10	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily. (1381 aa)
	A0A2C9US96	Helicase ATP-binding domain-containing protein. (375 aa)
	A0A2C9USF0	Uncharacterized protein. (166 aa)
	MANES_S021700	C2H2-type domain-containing protein. (742 aa)
	A0A251J2C3	Uncharacterized protein. (175 aa)
	A0A251JA94	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family. (1120 aa)
	A0A2C9UTE2	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily. (1351 aa)
	A0A2C9UTR8	Nuclear cap-binding protein subunit 2. (254 aa)
	A0A2C9V0Y8	DRBM domain-containing protein. (240 aa)
	A0A2C9V0Y9	Uncharacterized protein. (437 aa)
	A0A2C9V192	Uncharacterized protein. (336 aa)
	A0A2C9V1G2	Uncharacterized protein. (460 aa)
	A0A2C9V1L9	C2H2-type domain-containing protein. (744 aa)
	A0A2C9VBV7	Uncharacterized protein. (496 aa)
	A0A2C9VCY5	Uncharacterized protein. (575 aa)
	A0A2C9VGM7	3'-5' exonuclease domain-containing protein. (584 aa)
	A0A2C9VJX9	Uncharacterized protein. (1752 aa)
	A0A2C9VPW5	Uncharacterized protein. (947 aa)
	MED17	Mediator of RNA polymerase II transcription subunit 17; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (665 aa)
	A0A2C9VS80	Uncharacterized protein. (372 aa)
	A0A2C9VSC6	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily. (1982 aa)
	A0A2C9VTG4	MIF4G domain-containing protein. (869 aa)
	A0A2C9VXA0	Uncharacterized protein; Belongs to the argonaute family. (1017 aa)
	A0A2C9VXP2	Uncharacterized protein. (649 aa)
	A0A2C9VXU1	SURP motif domain-containing protein. (889 aa)
	A0A2C9VZQ5	WD_REPEATS_REGION domain-containing protein. (313 aa)
	A0A2C9W056	Uncharacterized protein. (464 aa)
	A0A2C9W0J2	Uncharacterized protein. (335 aa)
	A0A2C9W190	DRBM domain-containing protein. (228 aa)
	A0A2C9W2V6	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1937 aa)
	A0A2C9W3J6	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1205 aa)
	A0A2C9W4A9	Uncharacterized protein. (367 aa)
	A0A2C9W4T5	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily. (1696 aa)
	A0A2C9W510	Uncharacterized protein. (608 aa)
	A0A2C9W6I0	DUF1771 domain-containing protein. (490 aa)
	A0A2C9W6Z2	FHA domain-containing protein. (444 aa)
	A0A2C9WHD0	Uncharacterized protein; Belongs to the argonaute family. (1021 aa)
	A0A2C9WND8	Uncharacterized protein. (661 aa)
	A0A251LBW4	Uncharacterized protein. (172 aa)
	A0A251LE42	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1451 aa)
	A0A2C9U147	Uncharacterized protein. (346 aa)
	A0A2C9U6B9	Uncharacterized protein. (1889 aa)
	A0A2C9U728	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family. (1122 aa)
	A0A2C9UAR2	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family. (1019 aa)
	A0A2C9UB98	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family. (1199 aa)

Your Current Organism:

Manihot esculenta

NCBI taxonomy Id: 3983
Other names: M. esculenta, Manihot esculenta Crantz, Manihot utilissima, cassava, manioc, tapioca, yuca

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A251J2C3	A0A251LBW4	A0A251J2C3	A0A251LBW4	Uncharacterized protein.	Uncharacterized protein.	0.548
A0A251J2C3	A0A251LE42	A0A251J2C3	A0A251LE42	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.456
A0A251J2C3	A0A2C9USF0	A0A251J2C3	A0A2C9USF0	Uncharacterized protein.	Uncharacterized protein.	0.563
A0A251J2C3	A0A2C9VJX9	A0A251J2C3	A0A2C9VJX9	Uncharacterized protein.	Uncharacterized protein.	0.508
A0A251J2C3	A0A2C9W2V6	A0A251J2C3	A0A2C9W2V6	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.515
A0A251J2C3	A0A2C9W4T5	A0A251J2C3	A0A2C9W4T5	Uncharacterized protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.449
A0A251JA94	A0A251LE42	A0A251JA94	A0A251LE42	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.891
A0A251JA94	A0A2C9U728	A0A251JA94	A0A2C9U728	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	0.567
A0A251JA94	A0A2C9UAR2	A0A251JA94	A0A2C9UAR2	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	0.625
A0A251JA94	A0A2C9UB98	A0A251JA94	A0A2C9UB98	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	0.631
A0A251JA94	A0A2C9UBI6	A0A251JA94	A0A2C9UBI6	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.636
A0A251JA94	A0A2C9UFK1	A0A251JA94	A0A2C9UFK1	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	0.567
A0A251JA94	A0A2C9US10	A0A251JA94	A0A2C9US10	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.405
A0A251JA94	A0A2C9US96	A0A251JA94	A0A2C9US96	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	Helicase ATP-binding domain-containing protein.	0.405
A0A251JA94	A0A2C9UTE2	A0A251JA94	A0A2C9UTE2	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.405
A0A251JA94	A0A2C9VPW5	A0A251JA94	A0A2C9VPW5	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	Uncharacterized protein.	0.416
A0A251JA94	A0A2C9VSC6	A0A251JA94	A0A2C9VSC6	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.539
A0A251JA94	A0A2C9W2V6	A0A251JA94	A0A2C9W2V6	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.494
A0A251JA94	A0A2C9W3J6	A0A251JA94	A0A2C9W3J6	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.636
A0A251JA94	A0A2C9W4T5	A0A251JA94	A0A2C9W4T5	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.557