(10 nodes) Exon-exon junction complex network (Manihot esculenta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2C9VK20	Uncharacterized protein. (1202 aa)
	A0A2C9V5Q4	Mago-bind domain-containing protein. (246 aa)
	A0A2C9UYI1	Btz domain-containing protein. (698 aa)
	A0A2C9UJD7	RRM domain-containing protein. (197 aa)
	A0A251L3J1	Btz domain-containing protein. (734 aa)
	A0A251KGR2	Smg4_UPF3 domain-containing protein. (509 aa)
	A0A2C9VHL4	Mago-bind domain-containing protein. (233 aa)
	A0A2C9VTL8	Uncharacterized protein. (151 aa)
	A0A2C9VSX3	RRM domain-containing protein. (198 aa)
	A0A2C9VHX1	Smg4_UPF3 domain-containing protein. (511 aa)

Your Current Organism:

Manihot esculenta

NCBI taxonomy Id: 3983
Other names: M. esculenta, Manihot esculenta Crantz, Manihot utilissima, cassava, manioc, tapioca, yuca

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A251KGR2	A0A2C9UJD7	Smg4_UPF3 domain-containing protein.	RRM domain-containing protein.	0.954
A0A251KGR2	A0A2C9V5Q4	Smg4_UPF3 domain-containing protein.	Mago-bind domain-containing protein.	0.460
A0A251KGR2	A0A2C9VHL4	Smg4_UPF3 domain-containing protein.	Mago-bind domain-containing protein.	0.460
A0A251KGR2	A0A2C9VHX1	Smg4_UPF3 domain-containing protein.	Smg4_UPF3 domain-containing protein.	0.900
A0A251KGR2	A0A2C9VK20	Smg4_UPF3 domain-containing protein.	Uncharacterized protein.	0.998
A0A251KGR2	A0A2C9VSX3	Smg4_UPF3 domain-containing protein.	RRM domain-containing protein.	0.954
A0A251KGR2	A0A2C9VTL8	Smg4_UPF3 domain-containing protein.	Uncharacterized protein.	0.996
A0A251L3J1	A0A2C9UJD7	Btz domain-containing protein.	RRM domain-containing protein.	0.893
A0A251L3J1	A0A2C9V5Q4	Btz domain-containing protein.	Mago-bind domain-containing protein.	0.544
A0A251L3J1	A0A2C9VHL4	Btz domain-containing protein.	Mago-bind domain-containing protein.	0.544
A0A251L3J1	A0A2C9VSX3	Btz domain-containing protein.	RRM domain-containing protein.	0.893
A0A251L3J1	A0A2C9VTL8	Btz domain-containing protein.	Uncharacterized protein.	0.944
A0A2C9UJD7	A0A251KGR2	RRM domain-containing protein.	Smg4_UPF3 domain-containing protein.	0.954
A0A2C9UJD7	A0A251L3J1	RRM domain-containing protein.	Btz domain-containing protein.	0.893
A0A2C9UJD7	A0A2C9UYI1	RRM domain-containing protein.	Btz domain-containing protein.	0.893
A0A2C9UJD7	A0A2C9V5Q4	RRM domain-containing protein.	Mago-bind domain-containing protein.	0.992
A0A2C9UJD7	A0A2C9VHL4	RRM domain-containing protein.	Mago-bind domain-containing protein.	0.992
A0A2C9UJD7	A0A2C9VHX1	RRM domain-containing protein.	Smg4_UPF3 domain-containing protein.	0.954
A0A2C9UJD7	A0A2C9VK20	RRM domain-containing protein.	Uncharacterized protein.	0.994
A0A2C9UJD7	A0A2C9VSX3	RRM domain-containing protein.	RRM domain-containing protein.	0.900