(48 nodes) RNA helicase, DEAD-box type, Q motif network (Manihot esculenta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2C9WP56	Uncharacterized protein; Belongs to the DEAD box helicase family. (657 aa)
	MANES_S066500	Uncharacterized protein; Belongs to the DEAD box helicase family. (438 aa)
	MANES_S022400	Uncharacterized protein. (532 aa)
	A0A251INW9	Uncharacterized protein. (1156 aa)
	A0A251J0F0	Uncharacterized protein; Belongs to the DEAD box helicase family. (413 aa)
	A0A251J4V2	Uncharacterized protein. (611 aa)
	A0A251JHL0	Uncharacterized protein; Belongs to the DEAD box helicase family. (438 aa)
	A0A251KFK7	Uncharacterized protein. (1163 aa)
	A0A251L2N2	Uncharacterized protein. (540 aa)
	A0A251LE12	Uncharacterized protein. (557 aa)
	A0A251LKT9	Uncharacterized protein; Belongs to the DEAD box helicase family. (700 aa)
	A0A2C9U0E8	Uncharacterized protein; Belongs to the DEAD box helicase family. (753 aa)
	A0A2C9U2Z6	Uncharacterized protein; Belongs to the DEAD box helicase family. (566 aa)
	A0A2C9U4P0	Uncharacterized protein; Belongs to the DEAD box helicase family. (537 aa)
	A0A2C9U7R0	RNA helicase. (594 aa)
	A0A2C9UAV4	Uncharacterized protein. (427 aa)
	A0A2C9UCY7	Uncharacterized protein. (809 aa)
	A0A2C9UH63	Uncharacterized protein; Belongs to the DEAD box helicase family. (620 aa)
	A0A2C9UJJ1	Uncharacterized protein; Belongs to the DEAD box helicase family. (498 aa)
	A0A2C9ULC4	Uncharacterized protein. (633 aa)
	A0A2C9UQN3	Uncharacterized protein; Belongs to the DEAD box helicase family. (438 aa)
	A0A2C9UQT0	Uncharacterized protein. (609 aa)
	A0A2C9UXY0	Uncharacterized protein; Belongs to the DEAD box helicase family. (505 aa)
	A0A2C9UZQ1	Uncharacterized protein; Belongs to the DEAD box helicase family. (413 aa)
	A0A2C9UZW9	Uncharacterized protein. (428 aa)
	A0A2C9V034	Uncharacterized protein. (410 aa)
	A0A2C9V7W5	Uncharacterized protein. (634 aa)
	A0A2C9VAD8	Uncharacterized protein. (657 aa)
	A0A2C9VCK1	Uncharacterized protein. (501 aa)
	A0A2C9VEI9	Uncharacterized protein. (620 aa)
	A0A2C9VMZ7	RNA helicase. (551 aa)
	A0A2C9VS56	Uncharacterized protein; Belongs to the DEAD box helicase family. (632 aa)
	A0A2C9VT15	Uncharacterized protein; Belongs to the DEAD box helicase family. (492 aa)
	A0A2C9VTK0	Uncharacterized protein; Belongs to the DEAD box helicase family. (794 aa)
	A0A2C9VUN6	Uncharacterized protein. (577 aa)
	A0A2C9VV26	Uncharacterized protein. (628 aa)
	A0A2C9VZA3	DEAD-box ATP-dependent RNA helicase 29. (790 aa)
	A0A2C9W2H3	Uncharacterized protein. (410 aa)
	A0A2C9W2K9	Uncharacterized protein; Belongs to the DEAD box helicase family. (413 aa)
	A0A2C9W3M6	Uncharacterized protein. (428 aa)
	A0A2C9W3M8	Uncharacterized protein. (593 aa)
	A0A2C9W5R2	Uncharacterized protein; Belongs to the DEAD box helicase family. (413 aa)
	A0A2C9W6Y0	RNA helicase. (722 aa)
	A0A2C9W721	Uncharacterized protein. (1148 aa)
	A0A2C9WF46	Uncharacterized protein. (619 aa)
	A0A2C9WGC1	Uncharacterized protein. (692 aa)
	A0A2C9WNE8	Uncharacterized protein. (821 aa)
	A0A2C9WNX0	Uncharacterized protein. (777 aa)

Your Current Organism:

Manihot esculenta

NCBI taxonomy Id: 3983
Other names: M. esculenta, Manihot esculenta Crantz, Manihot utilissima, cassava, manioc, tapioca, yuca

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A251INW9	A0A251KFK7	A0A251INW9	A0A251KFK7	Uncharacterized protein.	Uncharacterized protein.	0.900
A0A251INW9	A0A2C9VTK0	A0A251INW9	A0A2C9VTK0	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.585
A0A251INW9	A0A2C9VUN6	A0A251INW9	A0A2C9VUN6	Uncharacterized protein.	Uncharacterized protein.	0.402
A0A251INW9	A0A2C9W3M8	A0A251INW9	A0A2C9W3M8	Uncharacterized protein.	Uncharacterized protein.	0.455
A0A251INW9	A0A2C9WNE8	A0A251INW9	A0A2C9WNE8	Uncharacterized protein.	Uncharacterized protein.	0.587
A0A251J0F0	A0A251J4V2	A0A251J0F0	A0A251J4V2	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.423
A0A251J0F0	A0A2C9ULC4	A0A251J0F0	A0A2C9ULC4	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.421
A0A251J0F0	A0A2C9V034	A0A251J0F0	A0A2C9V034	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.666
A0A251J0F0	A0A2C9V7W5	A0A251J0F0	A0A2C9V7W5	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.419
A0A251J0F0	A0A2C9VEI9	A0A251J0F0	A0A2C9VEI9	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.417
A0A251J0F0	A0A2C9W2H3	A0A251J0F0	A0A2C9W2H3	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.666
A0A251J0F0	A0A2C9W3M8	A0A251J0F0	A0A2C9W3M8	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.440
A0A251J4V2	A0A251J0F0	A0A251J4V2	A0A251J0F0	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.423
A0A251J4V2	A0A251LE12	A0A251J4V2	A0A251LE12	Uncharacterized protein.	Uncharacterized protein.	0.464
A0A251J4V2	A0A2C9U7R0	A0A251J4V2	A0A2C9U7R0	Uncharacterized protein.	RNA helicase.	0.460
A0A251J4V2	A0A2C9UH63	A0A251J4V2	A0A2C9UH63	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.408
A0A251J4V2	A0A2C9UZQ1	A0A251J4V2	A0A2C9UZQ1	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.423
A0A251J4V2	A0A2C9VAD8	A0A251J4V2	A0A2C9VAD8	Uncharacterized protein.	Uncharacterized protein.	0.415
A0A251J4V2	A0A2C9VT15	A0A251J4V2	A0A2C9VT15	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.669
A0A251J4V2	A0A2C9W2K9	A0A251J4V2	A0A2C9W2K9	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.422