19 items (Manihot esculenta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2C9VXS1	Uncharacterized protein. (355 aa)
	A0A2C9W056	Uncharacterized protein. (464 aa)
	A0A2C9W190	DRBM domain-containing protein. (228 aa)
	A0A2C9WJZ6	Uncharacterized protein. (301 aa)
	A0A2C9WKI4	Uncharacterized protein. (1207 aa)
	A0A2C9UKR0	Uncharacterized protein. (1230 aa)
	A0A2C9U855	Uncharacterized protein. (965 aa)
	A0A2C9U6H7	Uncharacterized protein. (907 aa)
	A0A251KLR4	Uncharacterized protein. (841 aa)
	A0A251K5Q8	Uncharacterized protein. (1144 aa)
	A0A2C9V0Y9	Uncharacterized protein. (437 aa)
	A0A2C9V0Y8	DRBM domain-containing protein. (240 aa)
	A0A2C9VBV7	Uncharacterized protein. (496 aa)
	A0A2C9V1G2	Uncharacterized protein. (460 aa)
	A0A2C9UTE2	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily. (1351 aa)
	A0A2C9US10	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily. (1381 aa)
	A0A2C9VCY5	Uncharacterized protein. (575 aa)
	A0A2C9VH18	Uncharacterized protein. (160 aa)
	A0A2C9VSC6	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily. (1982 aa)

Your Current Organism:

Manihot esculenta

NCBI taxonomy Id: 3983
Other names: M. esculenta, Manihot esculenta Crantz, Manihot utilissima, cassava, manioc, tapioca, yuca

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2C9U6H7	A0A2C9VSC6	Uncharacterized protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.437
A0A2C9U855	A0A2C9VSC6	Uncharacterized protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.437
A0A2C9US10	A0A2C9VBV7	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	Uncharacterized protein.	0.459
A0A2C9UTE2	A0A2C9VBV7	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	Uncharacterized protein.	0.459
A0A2C9V0Y8	A0A2C9VBV7	DRBM domain-containing protein.	Uncharacterized protein.	0.724
A0A2C9V1G2	A0A2C9VSC6	Uncharacterized protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.559
A0A2C9VBV7	A0A2C9US10	Uncharacterized protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.459
A0A2C9VBV7	A0A2C9UTE2	Uncharacterized protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.459
A0A2C9VBV7	A0A2C9V0Y8	Uncharacterized protein.	DRBM domain-containing protein.	0.724
A0A2C9VBV7	A0A2C9VSC6	Uncharacterized protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.601
A0A2C9VBV7	A0A2C9W190	Uncharacterized protein.	DRBM domain-containing protein.	0.724
A0A2C9VSC6	A0A2C9U6H7	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	Uncharacterized protein.	0.437
A0A2C9VSC6	A0A2C9U855	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	Uncharacterized protein.	0.437
A0A2C9VSC6	A0A2C9V1G2	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	Uncharacterized protein.	0.559
A0A2C9VSC6	A0A2C9VBV7	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	Uncharacterized protein.	0.601
A0A2C9VSC6	A0A2C9VXS1	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	Uncharacterized protein.	0.461
A0A2C9VSC6	A0A2C9W056	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	Uncharacterized protein.	0.559
A0A2C9VSC6	A0A2C9WJZ6	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	Uncharacterized protein.	0.461
A0A2C9VXS1	A0A2C9VSC6	Uncharacterized protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.461
A0A2C9W056	A0A2C9VSC6	Uncharacterized protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.559