STRINGSTRING
MANES_S013000 MANES_S013000 A0A2C9WP56 A0A2C9WP56 LSM4-3 LSM4-3 A0A2C9WCE5 A0A2C9WCE5 LSM3-2 LSM3-2 A0A2C9WJ34 A0A2C9WJ34 LSM1-2 LSM1-2 A0A2C9W0E3 A0A2C9W0E3 LSM4-2 LSM4-2 A0A2C9VT15 A0A2C9VT15 A0A2C9VLN6 A0A2C9VLN6 A0A2C9VEC3 A0A2C9VEC3 LSM4 LSM4 A0A2C9VCX8 A0A2C9VCX8 A0A2C9VBG9 A0A2C9VBG9 A0A2C9V8M1 A0A2C9V8M1 A0A2C9V812 A0A2C9V812 A0A2C9V681 A0A2C9V681 A0A2C9V211 A0A2C9V211 LSM1 LSM1 LSM5-2 LSM5-2 LSM5 LSM5 LSM3 LSM3 A0A251KV49 A0A251KV49 A0A251JK31 A0A251JK31
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
MANES_S013000Sm domain-containing protein. (91 aa)
A0A2C9WP56Uncharacterized protein; Belongs to the DEAD box helicase family. (657 aa)
LSM4-3U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (148 aa)
A0A2C9WCE5Uncharacterized protein. (150 aa)
LSM3-2U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (97 aa)
A0A2C9WJ34Uncharacterized protein. (1374 aa)
LSM1-2U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (128 aa)
A0A2C9W0E3Ge1_WD40 domain-containing protein. (1296 aa)
LSM4-2U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (146 aa)
A0A2C9VT15Uncharacterized protein; Belongs to the DEAD box helicase family. (492 aa)
A0A2C9VLN6Nudix hydrolase domain-containing protein. (324 aa)
A0A2C9VEC3WD_REPEATS_REGION domain-containing protein. (1460 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (122 aa)
A0A2C9VCX8Uncharacterized protein. (367 aa)
A0A2C9VBG9Uncharacterized protein. (84 aa)
A0A2C9V8M1WD_REPEATS_REGION domain-containing protein. (1457 aa)
A0A2C9V812Uncharacterized protein. (365 aa)
A0A2C9V681Sm domain-containing protein. (105 aa)
A0A2C9V211Uncharacterized protein. (370 aa)
LSM1U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (128 aa)
LSM5-2U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (79 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (87 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (97 aa)
A0A251KV49Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing. (93 aa)
A0A251JK31Sm domain-containing protein. (91 aa)
Your Current Organism:
Manihot esculenta
NCBI taxonomy Id: 3983
Other names: M. esculenta, Manihot esculenta Crantz, Manihot utilissima, cassava, manioc, tapioca, yuca
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.