(47 nodes) Translesion synthesis by POLK network (Manihot esculenta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0M5JKF0	NAC transcription factors 92. (383 aa)
	A0A2C9VA78	NAC domain-containing protein. (245 aa)
	A0A2C9V8D2	Uncharacterized protein. (650 aa)
	A0A2C9V4J6	UmuC domain-containing protein. (686 aa)
	A0A2C9UT49	Ubiquitin-like domain-containing protein. (156 aa)
	A0A2C9USN2	Uncharacterized protein. (264 aa)
	A0A2C9UP90	Uncharacterized protein. (263 aa)
	A0A2C9UNR1	NAC domain-containing protein. (623 aa)
	A0A2C9UND2	Ubiquitin-like domain-containing protein. (156 aa)
	A0A2C9UMR5	AAA domain-containing protein. (1284 aa)
	A0A2C9U9R7	AAA domain-containing protein. (1193 aa)
	A0A2C9U5A0	AAA domain-containing protein. (1195 aa)
	A0A2C9U592	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (849 aa)
	A0A2C9U3P5	CCHC-type domain-containing protein. (163 aa)
	A0A2C9U2G1	Rep_fac_C domain-containing protein. (252 aa)
	A0A251KRR0	NAC domain-containing protein. (373 aa)
	MANES_S091500	Uncharacterized protein. (226 aa)
	A0A0M4G3S7	NAC transcription factors 94. (292 aa)
	A0A0M3R849	NAC transcription factors 3. (581 aa)
	A0A2C9VAA3	NAC domain-containing protein. (185 aa)
	A0A2C9VDR9	DNA polymerase. (1962 aa)
	A0A2C9VDY7	NAC domain-containing protein. (254 aa)
	A0A2C9VEK0	Uncharacterized protein. (429 aa)
	A0A2C9VF52	Ubiquitin-like domain-containing protein. (33 aa)
	A0A2C9VHU3	AAA domain-containing protein. (354 aa)
	A0A2C9VIT4	Uncharacterized protein. (658 aa)
	A0A2C9VKS4	UmuC domain-containing protein. (508 aa)
	A0A2C9VLV1	AAA domain-containing protein. (1262 aa)
	A0A2C9VNN1	Uncharacterized protein. (354 aa)
	A0A2C9VP72	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (624 aa)
	A0A2C9VPX4	AAA domain-containing protein. (1034 aa)
	A0A2C9VS54	Uncharacterized protein. (238 aa)
	A0A2C9VSB5	Ubiquitin-like domain-containing protein. (156 aa)
	A0A2C9VU42	HORMA domain-containing protein. (166 aa)
	A0A2C9VU82	NAC domain-containing protein. (494 aa)
	A0A2C9VZY1	Replication factor C subunit 1. (984 aa)
	A0A2C9W6U2	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (668 aa)
	A0A2C9WAM4	AAA domain-containing protein. (335 aa)
	A0A2C9WD70	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (264 aa)
	A0A2C9WEG8	ATPase_AAA_core domain-containing protein. (1256 aa)
	A0A2C9WEK2	AAA domain-containing protein. (342 aa)
	A0A2C9WLH4	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (266 aa)
	A0A2C9WN70	Uncharacterized protein. (789 aa)
	A0A2C9WNI8	Ubiquitin-like domain-containing protein. (156 aa)
	A0A2C9WNK7	NAC domain-containing protein. (516 aa)
	A0A2C9WPW4	NAC domain-containing protein. (513 aa)
	A0A2C9WR64	NAC domain-containing protein. (68 aa)

Your Current Organism:

Manihot esculenta

NCBI taxonomy Id: 3983
Other names: M. esculenta, Manihot esculenta Crantz, Manihot utilissima, cassava, manioc, tapioca, yuca

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0M3R849	A0A2C9U2G1	A0A0M3R849	A0A2C9U2G1	NAC transcription factors 3.	Rep_fac_C domain-containing protein.	0.552
A0A0M3R849	A0A2C9U5A0	A0A0M3R849	A0A2C9U5A0	NAC transcription factors 3.	AAA domain-containing protein.	0.414
A0A0M3R849	A0A2C9U9R7	A0A0M3R849	A0A2C9U9R7	NAC transcription factors 3.	AAA domain-containing protein.	0.414
A0A0M3R849	A0A2C9UMR5	A0A0M3R849	A0A2C9UMR5	NAC transcription factors 3.	AAA domain-containing protein.	0.414
A0A0M3R849	A0A2C9V8D2	A0A0M3R849	A0A2C9V8D2	NAC transcription factors 3.	Uncharacterized protein.	0.469
A0A0M3R849	A0A2C9VDR9	A0A0M3R849	A0A2C9VDR9	NAC transcription factors 3.	DNA polymerase.	0.538
A0A0M3R849	A0A2C9VEK0	A0A0M3R849	A0A2C9VEK0	NAC transcription factors 3.	Uncharacterized protein.	0.414
A0A0M3R849	A0A2C9VHU3	A0A0M3R849	A0A2C9VHU3	NAC transcription factors 3.	AAA domain-containing protein.	0.469
A0A0M3R849	A0A2C9VKS4	A0A0M3R849	A0A2C9VKS4	NAC transcription factors 3.	UmuC domain-containing protein.	0.409
A0A0M3R849	A0A2C9VLV1	A0A0M3R849	A0A2C9VLV1	NAC transcription factors 3.	AAA domain-containing protein.	0.414
A0A0M3R849	A0A2C9VPX4	A0A0M3R849	A0A2C9VPX4	NAC transcription factors 3.	AAA domain-containing protein.	0.414
A0A0M3R849	A0A2C9VU42	A0A0M3R849	A0A2C9VU42	NAC transcription factors 3.	HORMA domain-containing protein.	0.404
A0A0M3R849	A0A2C9VZY1	A0A0M3R849	A0A2C9VZY1	NAC transcription factors 3.	Replication factor C subunit 1.	0.615
A0A0M3R849	A0A2C9WAM4	A0A0M3R849	A0A2C9WAM4	NAC transcription factors 3.	AAA domain-containing protein.	0.579
A0A0M3R849	A0A2C9WD70	A0A0M3R849	A0A2C9WD70	NAC transcription factors 3.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.714
A0A0M3R849	A0A2C9WEG8	A0A0M3R849	A0A2C9WEG8	NAC transcription factors 3.	ATPase_AAA_core domain-containing protein.	0.615
A0A0M3R849	A0A2C9WEK2	A0A0M3R849	A0A2C9WEK2	NAC transcription factors 3.	AAA domain-containing protein.	0.414
A0A0M3R849	A0A2C9WLH4	A0A0M3R849	A0A2C9WLH4	NAC transcription factors 3.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.714
A0A0M3R849	A0A2C9WN70	A0A0M3R849	A0A2C9WN70	NAC transcription factors 3.	Uncharacterized protein.	0.469
A0A0M4G3S7	A0A2C9U2G1	A0A0M4G3S7	A0A2C9U2G1	NAC transcription factors 94.	Rep_fac_C domain-containing protein.	0.552