(15 nodes) Depurination network (Manihot esculenta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MANES_S022500	Histone H2B; Belongs to the histone H2B family. (139 aa)
	A0A2C9U352	Uncharacterized protein. (395 aa)
	A0A2C9U3H1	Uncharacterized protein. (397 aa)
	A0A2C9UPD1	Adenine DNA glycosylase; Adenine glycosylase active on G-A mispairs. (465 aa)
	A0A2C9V112	Histone H2B; Belongs to the histone H2B family. (147 aa)
	A0A2C9V1K4	Histone H2B; Belongs to the histone H2B family. (145 aa)
	A0A2C9V1K5	Histone domain-containing protein; Belongs to the histone H2B family. (233 aa)
	A0A2C9V3L1	Histone H2B; Belongs to the histone H2B family. (139 aa)
	A0A2C9VDC3	Uncharacterized protein. (268 aa)
	A0A2C9VJU8	Histone H2B; Belongs to the histone H2B family. (140 aa)
	A0A2C9VLX3	Uncharacterized protein. (478 aa)
	A0A2C9VM95	Histone H2B; Belongs to the histone H2B family. (139 aa)
	A0A2C9VZZ5	Histone H2B; Belongs to the histone H2B family. (143 aa)
	A0A2C9W0H3	Histone H2B; Belongs to the histone H2B family. (147 aa)
	A0A251LJ82	ENDO3c domain-containing protein. (412 aa)

Your Current Organism:

Manihot esculenta

NCBI taxonomy Id: 3983
Other names: M. esculenta, Manihot esculenta Crantz, Manihot utilissima, cassava, manioc, tapioca, yuca

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A251LJ82	A0A2C9UPD1	ENDO3c domain-containing protein.	Adenine DNA glycosylase; Adenine glycosylase active on G-A mispairs.	0.595
A0A251LJ82	A0A2C9VDC3	ENDO3c domain-containing protein.	Uncharacterized protein.	0.412
A0A2C9U352	A0A2C9UPD1	Uncharacterized protein.	Adenine DNA glycosylase; Adenine glycosylase active on G-A mispairs.	0.528
A0A2C9U352	A0A2C9VDC3	Uncharacterized protein.	Uncharacterized protein.	0.412
A0A2C9U3H1	A0A2C9UPD1	Uncharacterized protein.	Adenine DNA glycosylase; Adenine glycosylase active on G-A mispairs.	0.528
A0A2C9U3H1	A0A2C9VDC3	Uncharacterized protein.	Uncharacterized protein.	0.412
A0A2C9UPD1	A0A251LJ82	Adenine DNA glycosylase; Adenine glycosylase active on G-A mispairs.	ENDO3c domain-containing protein.	0.595
A0A2C9UPD1	A0A2C9U352	Adenine DNA glycosylase; Adenine glycosylase active on G-A mispairs.	Uncharacterized protein.	0.528
A0A2C9UPD1	A0A2C9U3H1	Adenine DNA glycosylase; Adenine glycosylase active on G-A mispairs.	Uncharacterized protein.	0.528
A0A2C9UPD1	A0A2C9VDC3	Adenine DNA glycosylase; Adenine glycosylase active on G-A mispairs.	Uncharacterized protein.	0.565
A0A2C9UPD1	A0A2C9VLX3	Adenine DNA glycosylase; Adenine glycosylase active on G-A mispairs.	Uncharacterized protein.	0.528
A0A2C9VDC3	A0A251LJ82	Uncharacterized protein.	ENDO3c domain-containing protein.	0.412
A0A2C9VDC3	A0A2C9U352	Uncharacterized protein.	Uncharacterized protein.	0.412
A0A2C9VDC3	A0A2C9U3H1	Uncharacterized protein.	Uncharacterized protein.	0.412
A0A2C9VDC3	A0A2C9UPD1	Uncharacterized protein.	Adenine DNA glycosylase; Adenine glycosylase active on G-A mispairs.	0.565
A0A2C9VDC3	A0A2C9VLX3	Uncharacterized protein.	Uncharacterized protein.	0.412
A0A2C9VLX3	A0A2C9UPD1	Uncharacterized protein.	Adenine DNA glycosylase; Adenine glycosylase active on G-A mispairs.	0.528
A0A2C9VLX3	A0A2C9VDC3	Uncharacterized protein.	Uncharacterized protein.	0.412