(22 nodes) RAS processing network (Manihot esculenta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MANES_S108900	Uncharacterized protein. (34 aa)
	A0A2C9U408	Uncharacterized protein. (40 aa)
	A0A251LYP3	Uncharacterized protein. (48 aa)
	A0A251L7G8	Uncharacterized protein. (48 aa)
	MANES_S057500	Uncharacterized protein. (57 aa)
	A0A2C9U718	Uncharacterized protein. (195 aa)
	A0A2C9VF52	Ubiquitin-like domain-containing protein. (33 aa)
	A0A2C9VKM7	Uncharacterized protein. (77 aa)
	A0A2C9VSB5	Ubiquitin-like domain-containing protein. (156 aa)
	A0A2C9VZJ2	Uncharacterized protein. (333 aa)
	A0A2C9W5H7	Uncharacterized protein. (77 aa)
	A0A2C9WF50	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (185 aa)
	A0A2C9WKS0	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (185 aa)
	A0A2C9WNI8	Ubiquitin-like domain-containing protein. (156 aa)
	A0A2C9UT49	Ubiquitin-like domain-containing protein. (156 aa)
	A0A2C9UND2	Ubiquitin-like domain-containing protein. (156 aa)
	A0A2C9UMJ7	Uncharacterized protein. (106 aa)
	A0A2C9UAH9	Uncharacterized protein. (162 aa)
	A0A2C9U7I7	Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding. (435 aa)
	A0A2C9V051	Uncharacterized protein. (48 aa)
	A0A2C9V8R5	Uncharacterized protein. (47 aa)
	A0A2C9VAD2	Uncharacterized protein. (300 aa)

Your Current Organism:

Manihot esculenta

NCBI taxonomy Id: 3983
Other names: M. esculenta, Manihot esculenta Crantz, Manihot utilissima, cassava, manioc, tapioca, yuca

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A251L7G8	A0A2C9VKM7	Uncharacterized protein.	Uncharacterized protein.	0.459
A0A2C9U718	A0A2C9U7I7	Uncharacterized protein.	Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.	0.543
A0A2C9U718	A0A2C9UAH9	Uncharacterized protein.	Uncharacterized protein.	0.545
A0A2C9U718	A0A2C9VAD2	Uncharacterized protein.	Uncharacterized protein.	0.833
A0A2C9U718	A0A2C9VZJ2	Uncharacterized protein.	Uncharacterized protein.	0.990
A0A2C9U7I7	A0A2C9U718	Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.	Uncharacterized protein.	0.543
A0A2C9U7I7	A0A2C9UAH9	Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.	Uncharacterized protein.	0.901
A0A2C9U7I7	A0A2C9VAD2	Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.	Uncharacterized protein.	0.982
A0A2C9U7I7	A0A2C9VZJ2	Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.	Uncharacterized protein.	0.997
A0A2C9UAH9	A0A2C9U718	Uncharacterized protein.	Uncharacterized protein.	0.545
A0A2C9UAH9	A0A2C9U7I7	Uncharacterized protein.	Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.	0.901
A0A2C9UAH9	A0A2C9VAD2	Uncharacterized protein.	Uncharacterized protein.	0.982
A0A2C9UAH9	A0A2C9VZJ2	Uncharacterized protein.	Uncharacterized protein.	0.997
A0A2C9VAD2	A0A2C9U718	Uncharacterized protein.	Uncharacterized protein.	0.833
A0A2C9VAD2	A0A2C9U7I7	Uncharacterized protein.	Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.	0.982
A0A2C9VAD2	A0A2C9UAH9	Uncharacterized protein.	Uncharacterized protein.	0.982
A0A2C9VAD2	A0A2C9VZJ2	Uncharacterized protein.	Uncharacterized protein.	0.988
A0A2C9VKM7	A0A251L7G8	Uncharacterized protein.	Uncharacterized protein.	0.459
A0A2C9VZJ2	A0A2C9U718	Uncharacterized protein.	Uncharacterized protein.	0.990
A0A2C9VZJ2	A0A2C9U7I7	Uncharacterized protein.	Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.	0.997