(9 nodes) Endomembrane system network (Paraburkholderia phytofirmans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ACD18635.1	TIGRFAM: NADPH-dependent F420 reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; KEGG: pde:Pden_1119 NADPH-dependent F420 reductase. (226 aa)
	gfa	S-(hydroxymethyl)glutathione synthase; Catalyzes the condensation of formaldehyde and glutathione to S-hydroxymethylglutathione. (191 aa)
	ACD16532.1	PFAM: NADP oxidoreductase coenzyme F420-dependent; KEGG: bxe:Bxe_B2670 hypothetical protein. (219 aa)
	ACD16448.1	PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: bxe:Bxe_B0403 hypothetical protein. (134 aa)
	ACD16344.1	PFAM: protein of unknown function DUF833; KEGG: bxe:Bxe_A2266 putative signal peptide protein. (285 aa)
	ACD20203.1	PFAM: Semialdehyde dehydrogenase NAD - binding; NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: bxe:Bxe_B1095 hypothetical protein. (199 aa)
	ACD20104.1	PFAM: NADP oxidoreductase coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: bxe:Bxe_B1098 putative reductase. (206 aa)
	gfa-2	S-(hydroxymethyl)glutathione synthase; Catalyzes the condensation of formaldehyde and glutathione to S-hydroxymethylglutathione; Belongs to the Gfa family. (191 aa)
	ACD18975.1	PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: bur:Bcep18194_A4872 glutathione-dependent formaldehyde-activating, GFA. (123 aa)

Your Current Organism:

Paraburkholderia phytofirmans

NCBI taxonomy Id: 398527
Other names: Burkholderia phytofirmans PsJN, Burkholderia sp. PsJN, P. phytofirmans PsJN, Paraburkholderia phytofirmans PsJN

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACD16448.1	ACD18975.1	Bphyt_2041	Bphyt_4603	PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: bxe:Bxe_B0403 hypothetical protein.	PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: bur:Bcep18194_A4872 glutathione-dependent formaldehyde-activating, GFA.	0.511
ACD18975.1	ACD16448.1	Bphyt_4603	Bphyt_2041	PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: bur:Bcep18194_A4872 glutathione-dependent formaldehyde-activating, GFA.	PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: bxe:Bxe_B0403 hypothetical protein.	0.511
gfa	gfa-2	Bphyt_4238	Bphyt_5113	S-(hydroxymethyl)glutathione synthase; Catalyzes the condensation of formaldehyde and glutathione to S-hydroxymethylglutathione.	S-(hydroxymethyl)glutathione synthase; Catalyzes the condensation of formaldehyde and glutathione to S-hydroxymethylglutathione; Belongs to the Gfa family.	0.901
gfa-2	gfa	Bphyt_5113	Bphyt_4238	S-(hydroxymethyl)glutathione synthase; Catalyzes the condensation of formaldehyde and glutathione to S-hydroxymethylglutathione; Belongs to the Gfa family.	S-(hydroxymethyl)glutathione synthase; Catalyzes the condensation of formaldehyde and glutathione to S-hydroxymethylglutathione.	0.901