STRINGSTRING
Daci_0498 Daci_0498 Daci_0525 Daci_0525 Daci_0615 Daci_0615 Daci_0687 Daci_0687 Daci_1674 Daci_1674 Daci_1675 Daci_1675 Daci_1677 Daci_1677 Daci_1679 Daci_1679 Daci_1681 Daci_1681 Daci_1682 Daci_1682 Daci_1683 Daci_1683 Daci_1800 Daci_1800 Daci_1801 Daci_1801 Daci_1802 Daci_1802 Daci_1998 Daci_1998 Daci_2687 Daci_2687 Daci_2688 Daci_2688 Daci_2983 Daci_2983 Daci_2984 Daci_2984 Daci_2985 Daci_2985 Daci_2986 Daci_2986 Daci_2987 Daci_2987 Daci_3015 Daci_3015 Daci_3713 Daci_3713 Daci_3714 Daci_3714 Daci_3890 Daci_3890 Daci_4056 Daci_4056 Daci_4057 Daci_4057 Daci_4058 Daci_4058 Daci_4059 Daci_4059 Daci_4060 Daci_4060 Daci_4061 Daci_4061 Daci_4062 Daci_4062 Daci_4063 Daci_4063 ctaB ctaB Daci_4065 Daci_4065 nuoN nuoN Daci_5168 Daci_5168 Daci_5169 Daci_5169 nuoK nuoK Daci_5171 Daci_5171 nuoI nuoI nuoH nuoH Daci_5174 Daci_5174 Daci_5175 Daci_5175 Daci_5176 Daci_5176 nuoD nuoD nuoC nuoC nuoB nuoB nuoA nuoA Daci_5436 Daci_5436 Daci_5501 Daci_5501 Daci_5502 Daci_5502 Daci_5503 Daci_5503 Daci_5589 Daci_5589 Daci_6046 Daci_6046 Daci_6047 Daci_6047
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Daci_0498PFAM: cytochrome c class I; KEGG: aav:Aave_0385 cytochrome c, class I. (180 aa)
Daci_0525PFAM: protein of unknown function DUF461; KEGG: pna:Pnap_1514 protein of unknown function DUF461. (170 aa)
Daci_0615KEGG: pfl:PFL_1656 acyl carrier protein-related protein. (74 aa)
Daci_0687PFAM: ferredoxin; cytochrome P450; Oxidoreductase FAD-binding domain protein; KEGG: reu:Reut_B5278 ferredoxin:cytochrome P450:oxidoreductase FAD/NAD(P)-binding:oxidoreductase FAD-binding region. (794 aa)
Daci_1674Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). (380 aa)
Daci_1675Cytochrome c oxidase, subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B. (556 aa)
Daci_1677PFAM: cytochrome c oxidase assembly protein CtaG/Cox11; KEGG: ajs:Ajs_3534 cytochrome c oxidase assembly protein CtaG/Cox11. (197 aa)
Daci_1679PFAM: cytochrome c oxidase subunit III; KEGG: ajs:Ajs_3532 cytochrome c oxidase, subunit III. (293 aa)
Daci_1681KEGG: ajs:Ajs_3530 putative transmembrane cytochrome oxidase. (257 aa)
Daci_1682KEGG: ajs:Ajs_3529 hypothetical protein. (220 aa)
Daci_1683PFAM: electron transport protein SCO1/SenC; KEGG: aav:Aave_3898 electron transport protein SCO1/SenC. (204 aa)
Daci_1800PFAM: peptidase M16 domain protein; KEGG: ajs:Ajs_3519 peptidase M16 domain protein. (492 aa)
Daci_1801PFAM: peptidase M16 domain protein; KEGG: aav:Aave_3871 peptidase M16 domain protein. (453 aa)
Daci_1802TIGRFAM: methyltransferase; PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_3517 putative methyltransferase. (236 aa)
Daci_1998Electron transport protein SCO1/SenC; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; electron transport protein SCO1/SenC; KEGG: mpt:Mpe_A3172 putative lipoprotein. (221 aa)
Daci_2687KEGG: pst:PSPTO_2851 SCO1/SenC family protein. (84 aa)
Daci_2688PFAM: protein of unknown function DUF461; KEGG: ajs:Ajs_3343 protein of unknown function DUF461. (159 aa)
Daci_2983KEGG: ajs:Ajs_0638 transcriptional regulatory protein, MerR family. (111 aa)
Daci_2984PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: ajs:Ajs_0639 heat shock protein DnaJ domain protein. (331 aa)
Daci_2985KEGG: aav:Aave_3388 cytochrome c553-like protein. (281 aa)
Daci_2986Gluconate 2-dehydrogenase (acceptor); PFAM: cytochrome c class I; KEGG: aav:Aave_3387 cytochrome c, class I. (447 aa)
Daci_2987PFAM: Thioredoxin domain; KEGG: aav:Aave_3386 hypothetical protein. (133 aa)
Daci_3015PFAM: peptidase M16 domain protein; KEGG: aav:Aave_3753 peptidase M16 domain protein; Belongs to the peptidase M16 family. (444 aa)
Daci_3713KEGG: mxa:MXAN_1292 hypothetical protein. (320 aa)
Daci_3714PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: ppr:PBPRB0302 conserved hypothetical protein. (359 aa)
Daci_3890KEGG: bpd:BURPS668_A0697 hypothetical protein. (210 aa)
Daci_4056PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: aav:Aave_2224 major facilitator superfamily MFS_1. (445 aa)
Daci_4057TIGRFAM: ubiquinol oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; COX aromatic rich domain protein; KEGG: aav:Aave_2223 ubiquinol oxidase, subunit II. (348 aa)
Daci_4058KEGG: ajs:Ajs_2776 cytochrome-c oxidase; TIGRFAM: cytochrome o ubiquinol oxidase, subunit I; PFAM: cytochrome c oxidase subunit I; Belongs to the heme-copper respiratory oxidase family. (645 aa)
Daci_4059TIGRFAM: cytochrome o ubiquinol oxidase, subunit III; PFAM: cytochrome c oxidase subunit III; KEGG: aav:Aave_2221 cytochrome c oxidase, subunit III. (210 aa)
Daci_4060TIGRFAM: cytochrome o ubiquinol oxidase subunit IV; PFAM: cytochrome C oxidase subunit IV; KEGG: aav:Aave_2220 cytochrome c oxidase subunit IV. (146 aa)
Daci_4061PFAM: Surfeit locus 1 family protein; KEGG: aav:Aave_2219 surfeit locus 1 family protein. (237 aa)
Daci_4062Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mpt:Mpe_A1739 two-component sensor histidine kinase. (433 aa)
Daci_4063PFAM: response regulator receiver; helix-turn-helix Fis-type; KEGG: mpt:Mpe_A1738 two-component response regulator. (178 aa)
ctaBProtoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. (301 aa)
Daci_4065PFAM: cytochrome oxidase assembly; KEGG: aav:Aave_3900 cytochrome oxidase assembly. (506 aa)
nuoNProton-translocating NADH-quinone oxidoreductase, chain N; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family. (497 aa)
Daci_5168KEGG: ajs:Ajs_0969 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I). (491 aa)
Daci_5169KEGG: ajs:Ajs_0968 proton-translocating NADH-quinone oxidoreductase, chain L; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I). (679 aa)
nuoKNADH-ubiquinone oxidoreductase chain 4L; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4L family. (102 aa)
Daci_5171NADH-ubiquinone/plastoquinone oxidoreductase chain 6; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (222 aa)
nuoINADH-quinone oxidoreductase, chain I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (169 aa)
nuoHNADH dehydrogenase (quinone); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone. (358 aa)
Daci_5174NADH-quinone oxidoreductase, chain G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family. (707 aa)
Daci_5175NADH-quinone oxidoreductase, F subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family. (452 aa)
Daci_5176TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: aav:Aave_1267 NADH-quinone oxidoreductase, E subunit. (163 aa)
nuoDNADH dehydrogenase I, D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family. (417 aa)
nuoCNADH (or F420H2) dehydrogenase, subunit C; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 30 kDa subunit family. (203 aa)
nuoBNADH-quinone oxidoreductase, B subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient (By similarity). (159 aa)
nuoANADH-ubiquinone/plastoquinone oxidoreductase chain 3; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 3 family. (119 aa)
Daci_5436PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: aav:Aave_3613 4Fe-4S ferredoxin, iron-sulfur binding domain protein. (87 aa)
Daci_5501PFAM: cytochrome c1; KEGG: aav:Aave_3694 cytochrome c1. (251 aa)
Daci_5502Cytochrome b/b6 domain; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. (471 aa)
Daci_5503Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. (198 aa)
Daci_5589PFAM: cytochrome c class I; KEGG: ajs:Ajs_0710 cytochrome c, class I. (255 aa)
Daci_6046PFAM: RNP-1 like RNA-binding protein; KEGG: vei:Veis_0149 RNP-1 like RNA-binding protein. (124 aa)
Daci_6047PFAM: RNP-1 like RNA-binding protein; KEGG: aav:Aave_4781 RNP-1-like RNA-binding protein. (176 aa)
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.