STRINGSTRING
Daci_0087 Daci_0087 Daci_0088 Daci_0088 Daci_0089 Daci_0089 Daci_0090 Daci_0090 Daci_0192 Daci_0192 Daci_0194 Daci_0194 Daci_0568 Daci_0568 Daci_0695 Daci_0695 Daci_0697 Daci_0697 Daci_0802 Daci_0802 Daci_1197 Daci_1197 Daci_1198 Daci_1198 Daci_1339 Daci_1339 Daci_1340 Daci_1340 Daci_1393 Daci_1393 Daci_1394 Daci_1394 Daci_1529 Daci_1529 Daci_1543 Daci_1543 Daci_1758 Daci_1758 Daci_2037 Daci_2037 Daci_2207 Daci_2207 Daci_2270 Daci_2270 Daci_2443 Daci_2443 Daci_2758 Daci_2758 Daci_2768 Daci_2768 Daci_2854 Daci_2854 Daci_2875 Daci_2875 Daci_2935 Daci_2935 Daci_2967 Daci_2967 Daci_2998 Daci_2998 Daci_3137 Daci_3137 Daci_3288 Daci_3288 Daci_3313 Daci_3313 Daci_3314 Daci_3314 Daci_3675 Daci_3675 Daci_4265 Daci_4265 Daci_4266 Daci_4266 Daci_4817 Daci_4817 Daci_4822 Daci_4822 Daci_5563 Daci_5563 Daci_5964 Daci_5964 Daci_5966 Daci_5966 Daci_5970 Daci_5970 Daci_5972 Daci_5972 Daci_5973 Daci_5973 Daci_5985 Daci_5985 Daci_5988 Daci_5988 Daci_5991 Daci_5991
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Daci_0087TIGRFAM: acetoacetyl-CoA synthase; PFAM: AMP-dependent synthetase and ligase; KEGG: vei:Veis_3179 acetoacetyl-CoA synthase. (704 aa)
Daci_0088PFAM: acyl-CoA dehydrogenase domain protein; KEGG: ajs:Ajs_0061 acyl-CoA dehydrogenase domain protein. (385 aa)
Daci_0089PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: vei:Veis_4039 acyl-CoA dehydrogenase domain protein. (342 aa)
Daci_0090PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ajs:Ajs_0063 enoyl-CoA hydratase/isomerase. (262 aa)
Daci_0192KEGG: ajs:Ajs_0124 acetyl-CoA acetyltransferases; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (402 aa)
Daci_0194PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ajs:Ajs_0122 enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family. (265 aa)
Daci_0568PFAM: Enoyl-CoA hydratase/isomerase; KEGG: mpt:Mpe_A0984 putative enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (260 aa)
Daci_0695TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; KEGG: ajs:Ajs_0105 acetyl-CoA acetyltransferases; Belongs to the thiolase-like superfamily. Thiolase family. (392 aa)
Daci_0697PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: ajs:Ajs_0103 acyl-CoA dehydrogenase domain protein. (380 aa)
Daci_0802PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bpa:BPP1005 enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (262 aa)
Daci_1197PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pae:PA2841 probable enoyl-CoA hydratase/isomerase. (271 aa)
Daci_1198PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: ajs:Ajs_3718 3-hydroxybutyryl-CoA dehydrogenase. (282 aa)
Daci_1339PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: ajs:Ajs_0594 3-hydroxyacyl-CoA dehydrogenase, NAD-binding. (800 aa)
Daci_1340TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; KEGG: ajs:Ajs_0595 acetyl-CoA acetyltransferases; Belongs to the thiolase-like superfamily. Thiolase family. (398 aa)
Daci_1393PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: ajs:Ajs_3739 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; Belongs to the enoyl-CoA hydratase/isomerase family. (705 aa)
Daci_1394KEGG: ajs:Ajs_3738 acetyl-CoA acetyltransferases; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (398 aa)
Daci_1529PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ajs:Ajs_3623 enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family. (259 aa)
Daci_1543TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: lpp:lpp2264 3-hydroxybutyrate dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (260 aa)
Daci_1758PFAM: Enoyl-CoA hydratase/isomerase; KEGG: reh:H16_B1439 enoyl-CoA hydratase/carnithine racemase. (263 aa)
Daci_2037PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: psa:PST_0861 3-hydroxybutyrate dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (272 aa)
Daci_2207PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: ajs:Ajs_2979 acyl-CoA dehydrogenase domain protein. (398 aa)
Daci_2270TIGRFAM: acetoacetyl-CoA synthase; PFAM: AMP-dependent synthetase and ligase; KEGG: pna:Pnap_2133 acetoacetyl-CoA synthase. (654 aa)
Daci_2443PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: vei:Veis_1884 acyl-CoA dehydrogenase domain protein. (567 aa)
Daci_2758PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ccr:CC_2401 enoyl-CoA hydratase. (279 aa)
Daci_2768PFAM: Enoyl-CoA hydratase/isomerase; KEGG: vei:Veis_1256 enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family. (249 aa)
Daci_2854TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: aav:Aave_1586 3-hydroxybutyrate dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (264 aa)
Daci_2875PFAM: pyruvate carboxyltransferase; KEGG: aav:Aave_1652 pyruvate carboxyltransferase. (329 aa)
Daci_2935PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: ajs:Ajs_0103 acyl-CoA dehydrogenase domain protein. (381 aa)
Daci_2967PFAM: pyruvate carboxyltransferase; KEGG: pna:Pnap_3685 pyruvate carboxyltransferase. (331 aa)
Daci_2998PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ajs:Ajs_2556 enoyl-CoA hydratase/isomerase. (363 aa)
Daci_3137PFAM: pyruvate carboxyltransferase; KEGG: bam:Bamb_6280 pyruvate carboxyltransferase; Belongs to the alpha-IPM synthase/homocitrate synthase family. (317 aa)
Daci_3288PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: aav:Aave_3073 3-hydroxybutyryl-CoA dehydrogenase. (497 aa)
Daci_3313PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: ajs:Ajs_1684 3-hydroxyacyl-CoA dehydrogenase, NAD-binding. (703 aa)
Daci_3314KEGG: ajs:Ajs_1685 acetyl-CoA acetyltransferases; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (391 aa)
Daci_3675PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: aav:Aave_0176 acyl-CoA dehydrogenase domain protein. (387 aa)
Daci_4265KEGG: ajs:Ajs_1962 3-oxoacid CoA-transferase, B subunit; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase. (212 aa)
Daci_4266KEGG: aav:Aave_3127 3-oxoacid CoA-transferase, A subunit; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase. (235 aa)
Daci_4817KEGG: rme:Rmet_5432 thiolase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (394 aa)
Daci_4822PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pla:Plav_3255 enoyl-CoA hydratase/isomerase. (285 aa)
Daci_5563KEGG: ajs:Ajs_3548 beta-ketoadipyl CoA thiolase; TIGRFAM: acetyl-CoA acetyltransferase; beta-ketoadipyl CoA thiolase; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (403 aa)
Daci_5964PFAM: pyruvate carboxyltransferase; KEGG: ajs:Ajs_3757 pyruvate carboxyltransferase. (313 aa)
Daci_5966PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: bbr:BB2438 probable 3-hydroxybutyryl-CoA dehydrogenase. (320 aa)
Daci_5970Carbamoyl-phosphate synthase L chain ATP-binding; PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: ajs:Ajs_3759 carbamoyl-phosphate synthase L chain, ATP-binding. (672 aa)
Daci_5972PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ajs:Ajs_3761 enoyl-CoA hydratase/isomerase. (261 aa)
Daci_5973Propionyl-CoA carboxylase; PFAM: carboxyl transferase; KEGG: ajs:Ajs_3763 propionyl-CoA carboxylase. (535 aa)
Daci_5985PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: ajs:Ajs_3774 acyl-CoA dehydrogenase domain protein. (376 aa)
Daci_5988KEGG: ajs:Ajs_3776 acetyl-CoA acetyltransferases; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (393 aa)
Daci_5991PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: ajs:Ajs_3779 acyl-CoA dehydrogenase domain protein. (395 aa)
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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