STRINGSTRING
Daci_0184 Daci_0184 gatB gatB gatA gatA gatC gatC Daci_0607 Daci_0607 Daci_0608 Daci_0608 Daci_0609 Daci_0609 Daci_0610 Daci_0610 Daci_0611 Daci_0611 Daci_0612 Daci_0612 Daci_0613 Daci_0613 Daci_0614 Daci_0614 Daci_0616 Daci_0616 Daci_0732 Daci_0732 Daci_0762 Daci_0762 Daci_1250 Daci_1250 Daci_1273 Daci_1273 Daci_1274 Daci_1274 Daci_1444 Daci_1444 Daci_1762 Daci_1762 Daci_2042 Daci_2042 Daci_2044 Daci_2044 Daci_2089 Daci_2089 Daci_2090 Daci_2090 Daci_2091 Daci_2091 Daci_2092 Daci_2092 Daci_2093 Daci_2093 Daci_2094 Daci_2094 Daci_2285 Daci_2285 Daci_2470 Daci_2470 glnS glnS Daci_2855 Daci_2855 Daci_2900 Daci_2900 Daci_2972 Daci_2972 Daci_3360 Daci_3360 Daci_3361 Daci_3361 Daci_3362 Daci_3362 Daci_3363 Daci_3363 Daci_4309 Daci_4309 Daci_4337 Daci_4337 Daci_4744 Daci_4744 plsY plsY Daci_4883 Daci_4883 Daci_4884 Daci_4884 fabZ fabZ acpS acpS Daci_5268 Daci_5268 acpP acpP Daci_5270 Daci_5270 Daci_5271 Daci_5271 fabH fabH plsX plsX Daci_5391 Daci_5391 Daci_5442 Daci_5442 Daci_5564 Daci_5564 Daci_5639 Daci_5639 Daci_5677 Daci_5677 Daci_6048 Daci_6048
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Daci_0184PFAM: Amidase; KEGG: rrs:RoseRS_3083 amidase. (480 aa)
gatBglutamyl-tRNA(Gln) amidotransferase, B subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily. (481 aa)
gatAglutamyl-tRNA(Gln) amidotransferase, A subunit; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln). (498 aa)
gatCglutamyl-tRNA(Gln) amidotransferase, C subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family. (99 aa)
Daci_0607KEGG: mfa:Mfla_2647 hypothetical protein. (194 aa)
Daci_0608Hypothetical protein. (322 aa)
Daci_0609PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pfl:PFL_3447 hypothetical protein. (221 aa)
Daci_0610PFAM: Rieske [2Fe-2S] domain protein; KEGG: mfa:Mfla_2646 Rieske (2Fe-2S) region. (381 aa)
Daci_0611Acetyltransferase; KEGG: xac:XAC1961 acetyltransferase. (216 aa)
Daci_0612PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mfa:Mfla_2644 short-chain dehydrogenase/reductase SDR. (245 aa)
Daci_0613PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: xac:XAC1963 3-oxoacyl-[ACP] reductase. (253 aa)
Daci_0614PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; KEGG: mfa:Mfla_2642 3-oxoacyl-(acyl-carrier protein) synthase. (345 aa)
Daci_0616PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bte:BTH_I3210 TPR domain protein. (974 aa)
Daci_0732PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pol:Bpro_1454 short-chain dehydrogenase/reductase SDR. (249 aa)
Daci_0762KEGG: aav:Aave_2051 short-chain dehydrogenase/reductase SDR. (255 aa)
Daci_1250PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ajs:Ajs_0496 short-chain dehydrogenase/reductase SDR. (261 aa)
Daci_1273Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA; Necessary for the introduction of cis unsaturation into fatty acids. Catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to E- (2)-decenoyl-ACP and then its isomerization to Z-(3)-decenoyl-ACP. Can catalyze the dehydratase reaction for beta-hydroxyacyl-ACPs with saturated chain lengths up to 16:0, being most active on intermediate chain length. (174 aa)
Daci_1274PFAM: Beta-ketoacyl synthase; KEGG: ajs:Ajs_0526 beta-ketoacyl synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. (407 aa)
Daci_1444PFAM: Amidase; KEGG: bpe:BP1874 putative amidase. (456 aa)
Daci_1762KEGG: rfr:Rfer_1849 (acyl-carrier protein) S-malonyltransferase. (303 aa)
Daci_2042Aromatic catabolism protein-like protein; KEGG: fal:FRAAL3454 hypothetical protein. (151 aa)
Daci_2044PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rso:RSc2321 probable dehydrogenase/reductase oxidoreductase protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (260 aa)
Daci_2089PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pfl:PFL_1365 oxidoreductase, short chain dehydrogenase/reductase family. (252 aa)
Daci_2090PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: psp:PSPPH_3932 glucose 1-dehydrogenase, putative. (258 aa)
Daci_2091PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: psp:PSPPH_3933 major facilitator family transporter. (481 aa)
Daci_2092PFAM: polysaccharide deacetylase; KEGG: pfl:PFL_1362 polysaccharide deacetylase family protein. (291 aa)
Daci_2093PFAM: Amidase; KEGG: pfl:PFL_1361 amidase family protein. (477 aa)
Daci_2094Hypothetical protein. (175 aa)
Daci_2285PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bbr:BB0336 3-ketoacyl-(acyl-carrier-protein) reductase. (255 aa)
Daci_2470PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ajs:Ajs_2522 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (302 aa)
glnSKEGG: aav:Aave_2300 glutaminyl-tRNA synthetase; TIGRFAM: glutaminyl-tRNA synthetase; PFAM: glutamyl-tRNA synthetase class Ic. (628 aa)
Daci_2855PFAM: alpha/beta hydrolase fold; KEGG: aav:Aave_1587 alpha/beta hydrolase fold. (335 aa)
Daci_2900Hypothetical protein; KEGG: xac:XAC4326 urea amidolyase. (43 aa)
Daci_2972PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ajs:Ajs_1809 short-chain dehydrogenase/reductase SDR. (266 aa)
Daci_3360PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ajs:Ajs_1695 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (263 aa)
Daci_3361PFAM: thioesterase superfamily protein; KEGG: vei:Veis_2354 uncharacterized domain 1. (148 aa)
Daci_3362PFAM: Alcohol dehydrogenase zinc-binding domain protein; KEGG: aav:Aave_2871 alcohol dehydrogenase, zinc-binding domain protein. (339 aa)
Daci_3363PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ajs:Ajs_1700 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (301 aa)
Daci_4309PFAM: thioesterase superfamily protein; KEGG: vei:Veis_3983 thioesterase superfamily protein. (156 aa)
Daci_4337PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: aav:Aave_3151 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (258 aa)
Daci_4744PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ajs:Ajs_1606 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (252 aa)
plsYProtein of unknown function DUF205; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP. (226 aa)
Daci_4883KEGG: ajs:Ajs_1755 hypothetical protein. (224 aa)
Daci_4884PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: vei:Veis_3005 short-chain dehydrogenase/reductase SDR. (261 aa)
fabZBeta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs. (146 aa)
acpSHolo-acyl-carrier-protein synthase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family. (131 aa)
Daci_52683-oxoacyl-(acyl-carrier-protein) synthase 2; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. (414 aa)
acpPAcyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family. (79 aa)
Daci_52703-oxoacyl-(acyl-carrier-protein) reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family. (248 aa)
Daci_5271TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: ajs:Ajs_3279 malonyl CoA-acyl carrier protein transacylase. (333 aa)
fabH3-oxoacyl-(acyl-carrier-protein) synthase III; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched-chain and/or straight-chain of fatty acids; Belongs to the thiolase-like superfamily. FabH family. (325 aa)
plsXFatty acid/phospholipid synthesis protein PlsX; Catalyzes the reversible formation of acyl-phosphate (acyl- PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA. (346 aa)
Daci_5391PFAM: short-chain dehydrogenase/reductase SDR; KEGG: aav:Aave_1080 short-chain dehydrogenase/reductase SDR. (265 aa)
Daci_5442PFAM: Amidase; KEGG: vei:Veis_0140 amidase. (493 aa)
Daci_5564PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pna:Pnap_0868 short-chain dehydrogenase/reductase SDR. (246 aa)
Daci_5639PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bam:Bamb_3531 short-chain dehydrogenase/reductase SDR. (250 aa)
Daci_5677TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase; KEGG: pfl:PFL_3434 3-oxoacyl-(acyl-carrier-protein) synthase II; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. (495 aa)
Daci_6048PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ajs:Ajs_4129 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (266 aa)
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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