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Daci_1169 Daci_1169 Daci_1170 Daci_1170 Daci_1171 Daci_1171 Daci_1172 Daci_1172 Daci_1173 Daci_1173 Daci_1449 Daci_1449 Daci_1450 Daci_1450 Daci_1876 Daci_1876 Daci_1877 Daci_1877 Daci_1878 Daci_1878 Daci_1879 Daci_1879 Daci_1880 Daci_1880 Daci_1881 Daci_1881 Daci_2266 Daci_2266 Daci_2267 Daci_2267 Daci_2951 Daci_2951 Daci_2952 Daci_2952 Daci_2953 Daci_2953 Daci_3064 Daci_3064 Daci_3268 Daci_3268 Daci_3269 Daci_3269 Daci_3270 Daci_3270 Daci_3271 Daci_3271 Daci_3272 Daci_3272 Daci_3273 Daci_3273 Daci_3274 Daci_3274 Daci_3275 Daci_3275 Daci_3276 Daci_3276 Daci_3297 Daci_3297 Daci_3326 Daci_3326 Daci_3327 Daci_3327 Daci_3562 Daci_3562 Daci_3563 Daci_3563 Daci_3738 Daci_3738 Daci_3948 Daci_3948 Daci_4750 Daci_4750 Daci_4751 Daci_4751 Daci_4761 Daci_4761 Daci_5890 Daci_5890 Daci_5891 Daci_5891 Daci_5892 Daci_5892 Daci_5893 Daci_5893 Daci_5894 Daci_5894 Daci_5895 Daci_5895 Daci_5897 Daci_5897
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Daci_1169RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: xcb:XC_0556 RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (187 aa)
Daci_1170anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: xcb:XC_0557 transmembrane sensor. (356 aa)
Daci_1171TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: pfl:PFL_3315 outer membrane ferripyoverdine receptor. (803 aa)
Daci_1172PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: pla:Plav_0377 2OG-Fe(II) oxygenase. (226 aa)
Daci_1173TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bxe:Bxe_B0794 TonB-dependent siderophore receptor. (741 aa)
Daci_1449TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: psp:PSPPH_1870 outer membrane ferripyoverdine receptor. (822 aa)
Daci_1450TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: FecR protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pen:PSEEN1038 FecR-like transmembrane sensor. (440 aa)
Daci_1876Hypothetical protein. (65 aa)
Daci_1877PFAM: PepSY-associated TM helix domain protein; KEGG: aav:Aave_3008 PepSY-associated TM helix domain protein. (395 aa)
Daci_1878TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rpc:RPC_2858 TonB-dependent siderophore receptor. (722 aa)
Daci_1879TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: mms:mma_1159 outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid. (841 aa)
Daci_1880Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: bam:Bamb_5992 transcriptional regulator, AraC family. (327 aa)
Daci_1881PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: bur:Bcep18194_C6613 metal-dependent phosphohydrolase. (213 aa)
Daci_2266TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: mms:mma_1643 TonB-dependent ferric siderophore receptor. (724 aa)
Daci_2267PFAM: PepSY-associated TM helix domain protein; KEGG: mms:mma_3524 hypothetical protein. (409 aa)
Daci_2951RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: rso:RS00872 probable extracytoplasmic function sigma factor transcription regulator protein; Belongs to the sigma-70 factor family. ECF subfamily. (182 aa)
Daci_2952anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: pau:PA14_46650 putative transmembrane sensor. (319 aa)
Daci_2953TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: reh:H16_A3182 outer membrane receptor, TonB dependent. (792 aa)
Daci_3064TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: aav:Aave_1367 TonB-dependent siderophore receptor. (719 aa)
Daci_3268RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: mms:mma_3497 RNA polymerase sigma-70 factor, ECF subfamily. (163 aa)
Daci_3269anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: neu:NE1098 putative transmembrane sensor. (336 aa)
Daci_3270TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: pen:PSEEN3225 TonB-dependent siderophore receptor FpvA. (831 aa)
Daci_3271RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: mms:mma_3485 RNA polymerase sigma-70 factor, ECF subfamily. (168 aa)
Daci_3272anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: mms:mma_3484 Fe2+-dicitrate sensor, membrane component. (327 aa)
Daci_3273TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: xcb:XC_0558 ferric pseudobactin M114 receptor protein. (826 aa)
Daci_3274RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: psb:Psyr_1040 RNA polymerase sigma factor, ECF subfamily. (167 aa)
Daci_3275anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: mms:mma_3492 Fe2+-dicitrate sensor, membrane component. (327 aa)
Daci_3276TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: azo:azo2994 probable TonB-dependent receptor. (840 aa)
Daci_3297TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pae:PA1322 probable TonB-dependent receptor. (733 aa)
Daci_3326TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: FecR protein; sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: ppf:Pput_0896 anti-FecI sigma factor, FecR. (444 aa)
Daci_3327TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: reu:Reut_B3686 TonB-dependent siderophore receptor. (804 aa)
Daci_3562PFAM: FecR protein; KEGG: pfl:PFL_2292 sigma factor regulatory protein FecR. (323 aa)
Daci_3563RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pfl:PFL_2291 RNA polymerase sigma factor FecI; Belongs to the sigma-70 factor family. ECF subfamily. (182 aa)
Daci_3738PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pfl:PFL_5169 iron-regulated outer membrane virulence protein. (665 aa)
Daci_3948PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ajs:Ajs_2033 TonB-dependent receptor. (730 aa)
Daci_4750RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pen:PSEEN4328 RNA polymerase sigma-70 factor, ECF subfamily. (199 aa)
Daci_4751anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: pen:PSEEN1038 FecR-like transmembrane sensor. (344 aa)
Daci_4761RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: aav:Aave_3737 RNA polymerase, sigma-24 subunit, ECF subfamily. (174 aa)
Daci_5890RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: psb:Psyr_2580 sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily. (159 aa)
Daci_5891anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: neu:NE1098 putative transmembrane sensor. (327 aa)
Daci_5892TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rme:Rmet_1118 TonB-dependent siderophore receptor. (843 aa)
Daci_5893RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: azo:azo2373 putative sigma-70 factor, ECF subfamily. (171 aa)
Daci_5894anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: neu:NE0979 putative transmembrane sensor. (353 aa)
Daci_5895TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: bur:Bcep18194_A4504 TonB-dependent siderophore receptor. (827 aa)
Daci_5897TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: aci:ACIAD2049 putative ferric siderophore receptor protein. (705 aa)
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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