STRINGSTRING
Daci_1449 Daci_1449 Daci_1450 Daci_1450 Daci_3562 Daci_3562 Daci_3563 Daci_3563 Daci_4750 Daci_4750 Daci_4751 Daci_4751
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Daci_1449TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: psp:PSPPH_1870 outer membrane ferripyoverdine receptor. (822 aa)
Daci_1450TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: FecR protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pen:PSEEN1038 FecR-like transmembrane sensor. (440 aa)
Daci_3562PFAM: FecR protein; KEGG: pfl:PFL_2292 sigma factor regulatory protein FecR. (323 aa)
Daci_3563RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pfl:PFL_2291 RNA polymerase sigma factor FecI; Belongs to the sigma-70 factor family. ECF subfamily. (182 aa)
Daci_4750RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pen:PSEEN4328 RNA polymerase sigma-70 factor, ECF subfamily. (199 aa)
Daci_4751anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: pen:PSEEN1038 FecR-like transmembrane sensor. (344 aa)
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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