STRINGSTRING
Daci_2758 Daci_2758 Daci_0026 Daci_0026 Daci_0074 Daci_0074 Daci_0090 Daci_0090 Daci_0194 Daci_0194 Daci_0568 Daci_0568 Daci_0802 Daci_0802 Daci_1073 Daci_1073 Daci_1099 Daci_1099 Daci_1197 Daci_1197 Daci_1339 Daci_1339 Daci_1343 Daci_1343 Daci_1393 Daci_1393 Daci_1397 Daci_1397 Daci_1529 Daci_1529 Daci_1633 Daci_1633 Daci_1758 Daci_1758 Daci_1765 Daci_1765 Daci_1766 Daci_1766 Daci_1812 Daci_1812 clpP clpP Daci_2141 Daci_2141 Daci_2388 Daci_2388 accA accA clpP-2 clpP-2 Daci_2768 Daci_2768 Daci_2998 Daci_2998 Daci_3058 Daci_3058 Daci_3313 Daci_3313 Daci_3349 Daci_3349 Daci_3437 Daci_3437 Daci_3465 Daci_3465 Daci_3755 Daci_3755 Daci_3772 Daci_3772 Daci_3865 Daci_3865 Daci_4470 Daci_4470 Daci_4822 Daci_4822 Daci_4829 Daci_4829 accD accD Daci_5278 Daci_5278 Daci_5972 Daci_5972 Daci_5973 Daci_5973
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Daci_2758PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ccr:CC_2401 enoyl-CoA hydratase. (279 aa)
Daci_0026PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rfr:Rfer_4068 enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family. (262 aa)
Daci_0074TIGRFAM: benzoyl-CoA-dihydrodiol lyase; PFAM: Enoyl-CoA hydratase/isomerase; KEGG: vei:Veis_0732 enoyl-CoA hydratase/isomerase. (556 aa)
Daci_0090PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ajs:Ajs_0063 enoyl-CoA hydratase/isomerase. (262 aa)
Daci_0194PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ajs:Ajs_0122 enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family. (265 aa)
Daci_0568PFAM: Enoyl-CoA hydratase/isomerase; KEGG: mpt:Mpe_A0984 putative enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (260 aa)
Daci_0802PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bpa:BPP1005 enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (262 aa)
Daci_1073Carbamoyl-phosphate synthase L chain ATP-binding; PFAM: carboxyl transferase; biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: vei:Veis_1682 carbamoyl-phosphate synthase L chain, ATP-binding. (1097 aa)
Daci_1099Propionyl-CoA carboxylase; PFAM: carboxyl transferase; KEGG: reu:Reut_B3891 propionyl-CoA carboxylase. (515 aa)
Daci_1197PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pae:PA2841 probable enoyl-CoA hydratase/isomerase. (271 aa)
Daci_1339PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: ajs:Ajs_0594 3-hydroxyacyl-CoA dehydrogenase, NAD-binding. (800 aa)
Daci_1343PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ajs:Ajs_0598 enoyl-CoA hydratase/isomerase. (264 aa)
Daci_1393PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: ajs:Ajs_3739 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; Belongs to the enoyl-CoA hydratase/isomerase family. (705 aa)
Daci_1397PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ajs:Ajs_3735 enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family. (266 aa)
Daci_1529PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ajs:Ajs_3623 enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family. (259 aa)
Daci_1633PFAM: peptidase S14 ClpP; KEGG: bbr:BB1694 phage-related Clp protease; Belongs to the peptidase S14 family. (287 aa)
Daci_1758PFAM: Enoyl-CoA hydratase/isomerase; KEGG: reh:H16_B1439 enoyl-CoA hydratase/carnithine racemase. (263 aa)
Daci_1765TIGRFAM: malonate decarboxylase, gamma subunit; PFAM: malonate decarboxylase gamma subunit; KEGG: mpt:Mpe_A2892 malonate decarboxylase gamma subunit. (233 aa)
Daci_1766TIGRFAM: malonate decarboxylase, beta subunit; KEGG: mpt:Mpe_A2893 beta subunit of malonate decarboxylase. (305 aa)
Daci_1812KEGG: ajs:Ajs_3506 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; Belongs to the peptidase S41A family. (478 aa)
clpPEndopeptidase Clp; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. (201 aa)
Daci_2141PFAM: peptidase S41; KEGG: hch:HCH_04120 periplasmic protease. (489 aa)
Daci_2388PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ajs:Ajs_2812 enoyl-CoA hydratase/isomerase. (269 aa)
accAacetyl-CoA carboxylase, carboxyl transferase, alpha subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA. (325 aa)
clpP-2ATP-dependent Clp protease, proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. (202 aa)
Daci_2768PFAM: Enoyl-CoA hydratase/isomerase; KEGG: vei:Veis_1256 enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family. (249 aa)
Daci_2998PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ajs:Ajs_2556 enoyl-CoA hydratase/isomerase. (363 aa)
Daci_3058KEGG: rbe:RBE_0376 hypothetical protein. (503 aa)
Daci_3313PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: ajs:Ajs_1684 3-hydroxyacyl-CoA dehydrogenase, NAD-binding. (703 aa)
Daci_3349PFAM: peptidase S41. (557 aa)
Daci_3437PFAM: peptidase S14 ClpP; KEGG: sbm:Shew185_0756 peptidase S14 ClpP; Belongs to the peptidase S14 family. (345 aa)
Daci_3465Hypothetical protein; KEGG: bte:BTH_II1046 ClpP protease. (140 aa)
Daci_3755PFAM: carboxyl transferase; KEGG: ajs:Ajs_2042 carboxyl transferase. (510 aa)
Daci_3772PFAM: Enoyl-CoA hydratase/isomerase; KEGG: reu:Reut_A2907 enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (254 aa)
Daci_3865PFAM: peptidase S41; KEGG: rrs:RoseRS_3207 peptidase S41. (763 aa)
Daci_4470PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bbr:BB4415 putative enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family. (285 aa)
Daci_4822PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pla:Plav_3255 enoyl-CoA hydratase/isomerase. (285 aa)
Daci_4829PFAM: Enoyl-CoA hydratase/isomerase; KEGG: reu:Reut_A3284 enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family. (270 aa)
accDacetyl-CoA carboxylase, carboxyl transferase, beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family. (291 aa)
Daci_5278PFAM: peptidase S49; KEGG: aav:Aave_1177 peptidase S49. (348 aa)
Daci_5972PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ajs:Ajs_3761 enoyl-CoA hydratase/isomerase. (261 aa)
Daci_5973Propionyl-CoA carboxylase; PFAM: carboxyl transferase; KEGG: ajs:Ajs_3763 propionyl-CoA carboxylase. (535 aa)
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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