STRINGSTRING
Daci_3272 Daci_3272 Daci_1170 Daci_1170 Daci_3269 Daci_3269 Daci_3275 Daci_3275 Daci_3562 Daci_3562 Daci_5853 Daci_5853 Daci_5891 Daci_5891 Daci_5894 Daci_5894
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Daci_3272anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: mms:mma_3484 Fe2+-dicitrate sensor, membrane component. (327 aa)
Daci_1170anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: xcb:XC_0557 transmembrane sensor. (356 aa)
Daci_3269anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: neu:NE1098 putative transmembrane sensor. (336 aa)
Daci_3275anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: mms:mma_3492 Fe2+-dicitrate sensor, membrane component. (327 aa)
Daci_3562PFAM: FecR protein; KEGG: pfl:PFL_2292 sigma factor regulatory protein FecR. (323 aa)
Daci_5853anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: neu:NE1191 putative transmembrane sensor. (375 aa)
Daci_5891anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: neu:NE1098 putative transmembrane sensor. (327 aa)
Daci_5894anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: neu:NE0979 putative transmembrane sensor. (353 aa)
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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