STRINGSTRING
Spea_0934 Spea_0934 Spea_0937 Spea_0937 Spea_0942 Spea_0942 Spea_0943 Spea_0943 Spea_0944 Spea_0944 Spea_0945 Spea_0945 Spea_0946 Spea_0946 potA potA Spea_0948 Spea_0948 Spea_0949 Spea_0949 Spea_0950 Spea_0950 Spea_1042 Spea_1042 aguA aguA Spea_1203 Spea_1203 Spea_1204 Spea_1204 Spea_2478 Spea_2478 speA speA Spea_2555 Spea_2555 Spea_3270 Spea_3270 speE speE
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Spea_0934PFAM: protein of unknown function DUF861 cupin_3; KEGG: slo:Shew_0964 protein of unknown function DUF861, cupin_3. (128 aa)
Spea_0937PFAM: aldehyde dehydrogenase; KEGG: shw:Sputw3181_3079 aldehyde dehydrogenase (NAD(+)); Belongs to the aldehyde dehydrogenase family. (499 aa)
Spea_0942PFAM: FAD dependent oxidoreductase; KEGG: she:Shewmr4_2922 FAD dependent oxidoreductase. (435 aa)
Spea_0943Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: shn:Shewana3_3100 transcriptional regulator, XRE family. (182 aa)
Spea_0944PFAM: peptidase C26; KEGG: slo:Shew_0971 peptidase C26. (253 aa)
Spea_0945Glutamate--putrescine ligase; PFAM: glutamine synthetase catalytic region; KEGG: slo:Shew_0972 glutamate--ammonia ligase. (449 aa)
Spea_0946Extracellular solute-binding protein family 1; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family. (366 aa)
potASpermidine/putrescine ABC transporter ATPase subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system. (378 aa)
Spea_0948PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: slo:Shew_0975 binding-protein-dependent transport systems inner membrane component. (301 aa)
Spea_0949Ornithine carbamoyltransferase; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: slo:Shew_0976 binding-protein-dependent transport systems inner membrane component. (271 aa)
Spea_0950PFAM: FAD dependent oxidoreductase; KEGG: slo:Shew_0977 FAD dependent oxidoreductase. (440 aa)
Spea_1042PFAM: GCN5-related N-acetyltransferase; KEGG: bsu:BG10906 spermine/spermidine acetyltransferase. (162 aa)
aguAAgmatine deiminase; PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: pen:PSEEN2191 porphyromonas-type peptidyl-arginine deiminase. (368 aa)
Spea_1203Extracellular solute-binding protein family 1; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family. (361 aa)
Spea_1204PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: vpa:VP1774 putative carbon-nitrogen hydrolase. (290 aa)
Spea_2478TIGRFAM: putative agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: slo:Shew_1621 putative agmatinase; Belongs to the arginase family. (309 aa)
speAArginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. (637 aa)
Spea_2555PFAM: FAD dependent oxidoreductase; KEGG: slo:Shew_1537 FAD dependent oxidoreductase. (429 aa)
Spea_3270PFAM: GCN5-related N-acetyltransferase; KEGG: fra:Francci3_3270 GCN5-related N-acetyltransferase. (195 aa)
speESpermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine. (575 aa)
Your Current Organism:
Shewanella pealeana
NCBI taxonomy Id: 398579
Other names: S. pealeana ATCC 700345, Shewanella pealeana ATCC 700345, Shewanella pealeana str. ATCC 700345, Shewanella pealeana strain ATCC 700345
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