STRINGSTRING
Spea_0105 Spea_0105 selU selU selD selD Spea_0259 Spea_0259 Spea_0260 Spea_0260 Spea_0261 Spea_0261 Spea_0262 Spea_0262 Spea_0437 Spea_0437 Spea_0438 Spea_0438 Spea_0439 Spea_0439 Spea_0440 Spea_0440 fdhE fdhE selA selA fdhD fdhD Spea_0500 Spea_0500 Spea_0620 Spea_0620 Spea_0621 Spea_0621 Spea_0622 Spea_0622 napA napA napD napD nrfA nrfA hcp hcp Spea_1056 Spea_1056 Spea_1228 Spea_1228 napF napF Spea_1750 Spea_1750 Spea_1807 Spea_1807 Spea_1811 Spea_1811 Spea_1812 Spea_1812 Spea_1813 Spea_1813 Spea_2425 Spea_2425 Spea_2426 Spea_2426 napA-2 napA-2 napD-2 napD-2 nrfA-2 nrfA-2 Spea_2816 Spea_2816 Spea_2817 Spea_2817 Spea_2818 Spea_2818 Spea_3037 Spea_3037 Spea_3038 Spea_3038 Spea_3039 Spea_3039 Spea_3187 Spea_3187 Spea_3188 Spea_3188 Spea_3341 Spea_3341 Spea_3342 Spea_3342 Spea_3343 Spea_3343 torD torD Spea_3651 Spea_3651 Spea_3652 Spea_3652 Spea_3861 Spea_3861 Spea_3862 Spea_3862 Spea_3964 Spea_3964 Spea_3965 Spea_3965 Spea_3966 Spea_3966 Spea_3967 Spea_3967 Spea_3968 Spea_3968 Spea_3983 Spea_3983
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
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Spea_0105Rhodanese domain protein; Catalyzes, although with low efficiency, the sulfur transfer reaction from thiosulfate to cyanide. (102 aa)
selURhodanese domain protein; Involved in the post-transcriptional modification of the uridine at the wobble position (U34) of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Catalyzes the conversion of 2-thiouridine (S2U-RNA) to 2- selenouridine (Se2U-RNA). Acts in a two-step process involving geranylation of 2-thiouridine (S2U) to S-geranyl-2-thiouridine (geS2U) and subsequent selenation of the latter derivative to 2-selenouridine (Se2U) in the tRNA chain. (365 aa)
selDSelenide, water dikinase; Synthesizes selenophosphate from selenide and ATP. (346 aa)
Spea_0259KEGG: esa:ESA_03864 hypothetical protein. (295 aa)
Spea_0260PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gur:Gura_1944 4Fe-4S ferredoxin, iron-sulfur binding domain protein. (228 aa)
Spea_0261PFAM: Aldehyde ferredoxin oxidoreductase; KEGG: pth:PTH_0610 aldehyde:ferredoxin oxidoreductase. (713 aa)
Spea_0262Hypothetical protein. (117 aa)
Spea_0437PFAM: molybdopterin oxidoreductase Fe4S4 region; KEGG: sbm:Shew185_0099 molybdopterin oxidoreductase Fe4s4 region. (193 aa)
Spea_0438Formate dehydrogenase, alpha subunit; KEGG: sbm:Shew185_0099 molybdopterin oxidoreductase Fe4s4 region; TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (796 aa)
Spea_0439Formate dehydrogenase, beta subunit; The beta chain is an electron transfer unit containing 4 cysteine clusters involved in the formation of iron-sulfur centers. (300 aa)
Spea_0440TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: she:Shewmr4_0104 formate dehydrogenase, gamma subunit. (214 aa)
fdhEFormate dehydrogenase accessory protein FdhE; Necessary for formate dehydrogenase activity. Belongs to the FdhE family. (323 aa)
selAL-seryl-tRNA(Sec) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis. (496 aa)
fdhDFormate dehydrogenase family accessory protein FdhD; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family. (287 aa)
Spea_0500PFAM: ferredoxin; KEGG: ppr:PBPRB0250 hypothetical protein. (109 aa)
Spea_0620Nitrate reductase cytochrome c-type subunit (NapB); Electron transfer subunit of the periplasmic nitrate reductase complex NapAB; Belongs to the NapB family. (141 aa)
Spea_0621TIGRFAM: ferredoxin-type protein, NapH/MauN family; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: slo:Shew_3208 ferredoxin-type protein, NapH/MauN family. (298 aa)
Spea_0622TIGRFAM: MauM/NapG family ferredoxin-type protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: slo:Shew_3207 MauM/NapG family ferredoxin-type protein. (244 aa)
napAPeriplasmic nitrate reductase, large subunit; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite. (826 aa)
napDNapD family protein; Chaperone for NapA, the catalytic subunit of the periplasmic nitrate reductase. It binds directly and specifically to the twin- arginine signal peptide of NapA, preventing premature interaction with the Tat translocase and premature export. (91 aa)
nrfANitrite reductase (cytochrome; Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process; Belongs to the cytochrome c-552 family. (467 aa)
hcpHybrid cluster protein; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O. (554 aa)
Spea_1056PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: slo:Shew_1070 oxidoreductase FAD-binding domain protein. (374 aa)
Spea_1228Nitrite reductase (cytochrome; PFAM: cytochrome c552; KEGG: slo:Shew_0505 nitrite reductase (cytochrome; ammonia-forming); Belongs to the cytochrome c-552 family. (469 aa)
napFFerredoxin-type protein NapF; Could be involved in the maturation of NapA, the catalytic subunit of the periplasmic nitrate reductase, before its export into the periplasm; Belongs to the NapF family. (159 aa)
Spea_1750KEGG: slo:Shew_2344 hypothetical protein. (114 aa)
Spea_1807PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sfr:Sfri_1505 molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (971 aa)
Spea_1811TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: sfr:Sfri_1509 nitrite reductase (NAD(P)H), large subunit. (889 aa)
Spea_1812TIGRFAM: nitrite reductase [NAD(P)H], small subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: sfr:Sfri_1510 nitrite reductase (NAD(P)H), small subunit. (126 aa)
Spea_1813TIGRFAM: nitrite transporter; PFAM: major facilitator superfamily MFS_1; KEGG: sfr:Sfri_1511 nitrite transporter. (488 aa)
Spea_2425TIGRFAM: periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family; PFAM: NapC/NirT cytochrome c domain protein; KEGG: saz:Sama_1624 periplasmic nitrate reductase C-type cytochrome, NapC/NirT. (199 aa)
Spea_2426Nitrate reductase cytochrome c-type subunit (NapB); Electron transfer subunit of the periplasmic nitrate reductase complex NapAB; Belongs to the NapB family. (161 aa)
napA-2Periplasmic nitrate reductase, large subunit; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite. (829 aa)
napD-2NapD family protein; Chaperone for NapA, the catalytic subunit of the periplasmic nitrate reductase. It binds directly and specifically to the twin- arginine signal peptide of NapA, preventing premature interaction with the Tat translocase and premature export. (85 aa)
nrfA-2Nitrite reductase (cytochrome; Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process; Belongs to the cytochrome c-552 family. (466 aa)
Spea_2816PFAM: cytoplasmic chaperone TorD family protein; KEGG: sfr:Sfri_3126 cytoplasmic chaperone TorD family protein. (241 aa)
Spea_2817TIGRFAM: Dimethylsulfoxide reductase chain B; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sfr:Sfri_3683 4Fe-4S ferredoxin, iron-sulfur binding domain protein. (221 aa)
Spea_2818TIGRFAM: anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: spc:Sputcn32_0627 anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (840 aa)
Spea_3037PFAM: Polysulphide reductase NrfD; KEGG: shm:Shewmr7_0509 polysulphide reductase, NrfD. (315 aa)
Spea_3038PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: shn:Shewana3_3618 4Fe-4S ferredoxin, iron-sulfur binding domain protein. (190 aa)
Spea_3039PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sbm:Shew185_0531 molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (758 aa)
Spea_3187PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: shw:Sputw3181_3558 4Fe-4S ferredoxin, iron-sulfur binding domain protein. (192 aa)
Spea_3188PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: slo:Shew_0608 molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (756 aa)
Spea_3341PFAM: periplasmic nitrate reductase NapE; KEGG: sbl:Sbal_3211 periplasmic nitrate reductase NapE. (56 aa)
Spea_3342TIGRFAM: trimethylamine-N-oxide reductase c-type cytochrome TorC; PFAM: NapC/NirT cytochrome c domain protein; KEGG: son:SO_1233 tetraheme cytochrome c; Belongs to the TorC/TorY family. (392 aa)
Spea_3343TIGRFAM: trimethylamine-N-oxide reductase TorA; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: sfr:Sfri_1994 trimethylamine-N-oxide reductase TorA; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (830 aa)
torDCytoplasmic chaperone TorD family protein; Involved in the biogenesis of TorA. Acts on TorA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor; Belongs to the TorD/DmsD family. TorD subfamily. (221 aa)
Spea_3651PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sfr:Sfri_1582 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Belongs to the FAD-dependent oxidoreductase family. (389 aa)
Spea_3652PFAM: beta-lactamase domain protein; Rubredoxin-type Fe(Cys)4 protein; flavodoxin/nitric oxide synthase; KEGG: vvu:VV2_1343 anaerobic nitric oxide reductase flavorubredoxin. (493 aa)
Spea_3861TIGRFAM: anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sfr:Sfri_3128 anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (816 aa)
Spea_3862TIGRFAM: Dimethylsulfoxide reductase chain B; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: vpa:VP1448 anaerobic dimethyl sulfoxide reductase, subunit B. (205 aa)
Spea_3964KEGG: shw:Sputw3181_2184 hypothetical protein. (96 aa)
Spea_3965PFAM: Polysulphide reductase NrfD; KEGG: shw:Sputw3181_3893 polysulphide reductase, NrfD. (313 aa)
Spea_3966PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: shw:Sputw3181_3894 4Fe-4S ferredoxin, iron-sulfur binding domain protein. (227 aa)
Spea_3967KEGG: shw:Sputw3181_3895 formate-dependent nitrite reductase. (156 aa)
Spea_3968KEGG: slo:Shew_3155 hypothetical protein. (163 aa)
Spea_3983PFAM: NapC/NirT cytochrome c domain protein; KEGG: slo:Shew_3540 NapC/NirT cytochrome c domain protein. (187 aa)
Your Current Organism:
Shewanella pealeana
NCBI taxonomy Id: 398579
Other names: S. pealeana ATCC 700345, Shewanella pealeana ATCC 700345, Shewanella pealeana str. ATCC 700345, Shewanella pealeana strain ATCC 700345
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