STRINGSTRING
Spea_0841 Spea_0841 Spea_0843 Spea_0843 Spea_0844 Spea_0844 Spea_0845 Spea_0845 Spea_0846 Spea_0846 Spea_0847 Spea_0847 Spea_0970 Spea_0970 Spea_0977 Spea_0977 Spea_1138 Spea_1138 Spea_1642 Spea_1642 Spea_2647 Spea_2647 Spea_2648 Spea_2648 Spea_2649 Spea_2649 Spea_2650 Spea_2650 Spea_2651 Spea_2651 Spea_2652 Spea_2652 Spea_2929 Spea_2929 Spea_2999 Spea_2999 Spea_3206 Spea_3206 Spea_3207 Spea_3207 Spea_3208 Spea_3208 Spea_3209 Spea_3209 Spea_3325 Spea_3325 Spea_3326 Spea_3326 Spea_3327 Spea_3327 Spea_3328 Spea_3328 Spea_3329 Spea_3329 Spea_3330 Spea_3330 Spea_3331 Spea_3331 Spea_3332 Spea_3332 hmuV hmuV Spea_3374 Spea_3374 Spea_3381 Spea_3381 Spea_3382 Spea_3382 Spea_3520 Spea_3520 Spea_3521 Spea_3521 Spea_3522 Spea_3522 Spea_3523 Spea_3523 Spea_3524 Spea_3524 Spea_3525 Spea_3525 Spea_3526 Spea_3526 Spea_3527 Spea_3527 Spea_3528 Spea_3528 Spea_3529 Spea_3529 Spea_3530 Spea_3530 Spea_3531 Spea_3531 Spea_4236 Spea_4236
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Spea_0841KEGG: son:SO_0752 hypothetical protein. (43 aa)
Spea_0843PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: shw:Sputw3181_0711 oxidoreductase FAD/NAD(P)-binding domain protein. (249 aa)
Spea_0844PFAM: extracellular solute-binding protein family 1; KEGG: slo:Shew_0861 extracellular solute-binding protein, family 1. (335 aa)
Spea_0845PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sfr:Sfri_0637 binding-protein-dependent transport systems inner membrane component. (543 aa)
Spea_0846PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: sbl:Sbal_0603 ABC transporter related; Belongs to the ABC transporter superfamily. (342 aa)
Spea_0847TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: slo:Shew_0864 Dyp-type peroxidase family. (311 aa)
Spea_0970KEGG: slo:Shew_1007 major outer membrane lipoprotein, putative. (88 aa)
Spea_0977PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sbm:Shew185_0291 TonB-dependent receptor. (718 aa)
Spea_1138PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pfl:PFL_2240 receptor, putative. (652 aa)
Spea_1642KEGG: sbl:Sbal_3888 TonB family protein. (145 aa)
Spea_2647SMART: Tetratricopeptide domain protein; KEGG: sfr:Sfri_2621 tetratricopeptide domain protein. (415 aa)
Spea_2648TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. (206 aa)
Spea_2649PFAM: Biopolymer transport protein ExbD/TolR; KEGG: sbm:Shew185_1628 biopolymer transport protein ExbD/TolR. (134 aa)
Spea_2650PFAM: MotA/TolQ/ExbB proton channel; KEGG: sbm:Shew185_1627 MotA/TolQ/ExbB proton channel. (174 aa)
Spea_2651PFAM: MotA/TolQ/ExbB proton channel; KEGG: shn:Shewana3_2625 MotA/TolQ/ExbB proton channel. (451 aa)
Spea_2652KEGG: saz:Sama_1254 hypothetical protein. (260 aa)
Spea_2929TIGRFAM: TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: son:SO_0719 TonB-dependent receptor, putative. (755 aa)
Spea_2999TIGRFAM: TonB family protein; KEGG: son:SO_4043 TonB domain protein. (396 aa)
Spea_3206PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cps:CPS_1162 TonB-dependent vitamin B12 receptor. (617 aa)
Spea_3207KEGG: sbl:Sbal_0662 hypothetical protein. (215 aa)
Spea_3208Transcriptional repressor, CopY family; PFAM: Penicillinase repressor; KEGG: slo:Shew_2994 transcriptional repressor, CopY family. (125 aa)
Spea_3209TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. (397 aa)
Spea_3325PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: shw:Sputw3181_3199 pyridoxamine 5'-phosphate oxidase-related, FMN-binding. (189 aa)
Spea_3326PFAM: protein of unknown function DUF1008; KEGG: spc:Sputcn32_0967 protein of unknown function DUF1008. (174 aa)
Spea_3327TIGRFAM: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: shw:Sputw3181_3201 TonB-dependent heme/hemoglobin receptor family protein. (688 aa)
Spea_3328TIGRFAM: TonB family protein; KEGG: sbm:Shew185_1020 TonB family protein. (252 aa)
Spea_3329PFAM: MotA/TolQ/ExbB proton channel; KEGG: sbm:Shew185_1019 MotA/TolQ/ExbB proton channel. (258 aa)
Spea_3330PFAM: Biopolymer transport protein ExbD/TolR; KEGG: sbl:Sbal_0949 biopolymer transport protein ExbD/TolR. (137 aa)
Spea_3331PFAM: periplasmic binding protein; KEGG: sbm:Shew185_1017 periplasmic binding protein. (312 aa)
Spea_3332PFAM: transport system permease protein; KEGG: sbm:Shew185_1016 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (338 aa)
hmuVABC transporter related; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system. (268 aa)
Spea_3374PFAM: periplasmic binding protein; KEGG: shn:Shewana3_3272 periplasmic binding protein. (278 aa)
Spea_3381PFAM: transport system permease protein; KEGG: slo:Shew_0713 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (351 aa)
Spea_3382PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: slo:Shew_0712 ABC transporter-related protein. (308 aa)
Spea_3520KEGG: dps:DP2970 hypothetical protein. (454 aa)
Spea_3521TIGRFAM: TonB family protein; KEGG: dps:DP2971 similar to TonB protein. (212 aa)
Spea_3522PFAM: Biopolymer transport protein ExbD/TolR; KEGG: dps:DP2972 biopolymer transport protein (ExbD2). (133 aa)
Spea_3523PFAM: MotA/TolQ/ExbB proton channel; KEGG: vpa:VPA0153 TonB system transport protein ExbB2. (172 aa)
Spea_3524PFAM: MotA/TolQ/ExbB proton channel; KEGG: dps:DP2974 similar to transport protein TolQ. (469 aa)
Spea_3525KEGG: dps:DP2975 hypothetical protein. (260 aa)
Spea_3526KEGG: dps:DP2976 hypothetical protein. (275 aa)
Spea_3527KEGG: dps:DP2977 hypothetical protein. (230 aa)
Spea_3528PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dps:DP2978 related to iron (III) ABC transporter, ATP-binding protein. (444 aa)
Spea_3529PFAM: transport system permease protein; KEGG: dps:DP2979 probable iron (III) ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (348 aa)
Spea_3530PFAM: periplasmic binding protein; KEGG: dps:DP2980 probable iron (III) ABC transporter, periplasmic-binding protein. (332 aa)
Spea_3531PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: dps:DP2981 related to TonB dependent outer membrane receptor. (678 aa)
Spea_4236TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: slo:Shew_3841 TonB-dependent siderophore receptor. (710 aa)
Your Current Organism:
Shewanella pealeana
NCBI taxonomy Id: 398579
Other names: S. pealeana ATCC 700345, Shewanella pealeana ATCC 700345, Shewanella pealeana str. ATCC 700345, Shewanella pealeana strain ATCC 700345
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