STRINGSTRING
Spea_0607 Spea_0607 Spea_0978 Spea_0978 Spea_3268 Spea_3268 Spea_3269 Spea_3269 Spea_4008 Spea_4008
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Spea_0607KEGG: spc:Sputcn32_3895 hypothetical protein. (270 aa)
Spea_0978KEGG: slo:Shew_3159 uncharacterized FlgJ-related protein-like. (354 aa)
Spea_3268KEGG: vfi:VF1097 BAX protein. (307 aa)
Spea_3269KEGG: sdn:Sden_0849 hypothetical protein. (92 aa)
Spea_4008PFAM: polysaccharide deacetylase; KEGG: sbl:Sbal_0145 polysaccharide deacetylase. (348 aa)
Your Current Organism:
Shewanella pealeana
NCBI taxonomy Id: 398579
Other names: S. pealeana ATCC 700345, Shewanella pealeana ATCC 700345, Shewanella pealeana str. ATCC 700345, Shewanella pealeana strain ATCC 700345
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.