STRINGSTRING
Spea_2857 Spea_2857 Spea_0338 Spea_0338 Spea_0010 Spea_0010 Spea_3575 Spea_3575 Spea_3872 Spea_3872 Spea_3894 Spea_3894 hutH hutH hutU hutU hutI hutI Spea_3369 Spea_3369 Spea_3014 Spea_3014 Spea_2858 Spea_2858
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Spea_2857PFAM: amidohydrolase; KEGG: slo:Shew_2586 amidohydrolase. (1010 aa)
Spea_0338PFAM: phenylalanine/histidine ammonia-lyase; KEGG: son:SO_3299 Pal/histidase family protein. (550 aa)
Spea_0010Amidohydrolase; PFAM: peptidase S9B dipeptidylpeptidase IV domain protein; amidohydrolase; WD40 domain protein beta Propeller; KEGG: slo:Shew_0013 amidohydrolase. (1066 aa)
Spea_3575PFAM: phenylalanine/histidine ammonia-lyase; KEGG: spc:Sputcn32_2431 phenylalanine/histidine ammonia-lyase. (558 aa)
Spea_3872PFAM: amidohydrolase; Amidohydrolase 3; KEGG: vha:VIBHAR_06184 hypothetical protein. (419 aa)
Spea_3894PFAM: phenylalanine/histidine ammonia-lyase; KEGG: slo:Shew_3517 histidine ammonia-lyase. (520 aa)
hutHKEGG: slo:Shew_3756 histidine ammonia-lyase; TIGRFAM: histidine ammonia-lyase; PFAM: phenylalanine/histidine ammonia-lyase; Belongs to the PAL/histidase family. (510 aa)
hutUUrocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate. (562 aa)
hutIKEGG: slo:Shew_3759 imidazolonepropionase; TIGRFAM: imidazolonepropionase; PFAM: amidohydrolase; Amidohydrolase 3; Belongs to the metallo-dependent hydrolases superfamily. HutI family. (414 aa)
Spea_3369PFAM: phenylalanine/histidine ammonia-lyase; KEGG: slo:Shew_2280 phenylalanine/histidine ammonia-lyase. (561 aa)
Spea_3014PFAM: amidohydrolase; KEGG: slo:Shew_0983 amidohydrolase. (459 aa)
Spea_2858KEGG: slo:Shew_2587 hypothetical protein. (467 aa)
Your Current Organism:
Shewanella pealeana
NCBI taxonomy Id: 398579
Other names: S. pealeana ATCC 700345, Shewanella pealeana ATCC 700345, Shewanella pealeana str. ATCC 700345, Shewanella pealeana strain ATCC 700345
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