STRINGSTRING
Spea_2997 Spea_2997 Spea_4223 Spea_4223 Spea_4140 Spea_4140 Spea_4136 Spea_4136 Spea_4132 Spea_4132 Spea_4128 Spea_4128 Spea_4121 Spea_4121 Spea_3966 Spea_3966 Spea_3944 Spea_3944 Spea_3912 Spea_3912 Spea_3862 Spea_3862 Spea_3321 Spea_3321 queG queG Spea_3187 Spea_3187 Spea_3038 Spea_3038 Spea_3016 Spea_3016 Spea_2995 Spea_2995 Spea_2817 Spea_2817 Spea_2548 Spea_2548 rnfC rnfC rnfB rnfB Spea_1787 Spea_1787 napF napF Spea_0754 Spea_0754 Spea_0622 Spea_0622 Spea_0621 Spea_0621 Spea_0507 Spea_0507 Spea_0483 Spea_0483 Spea_0439 Spea_0439 Spea_0395 Spea_0395 Spea_0260 Spea_0260
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Spea_2997PFAM: protein of unknown function DUF162; KEGG: slo:Shew_3005 4Fe-4S ferredoxin, iron-sulfur binding domain protein. (457 aa)
Spea_4223TIGRFAM: Cytochrome c oxidase cbb3 type accessory protein FixG; KEGG: slo:Shew_3812 4Fe-4S ferredoxin, iron-sulfur binding domain protein. (473 aa)
Spea_4140PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: slo:Shew_0056 4Fe-4S ferredoxin, iron-sulfur binding domain protein. (559 aa)
Spea_4136PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: shw:Sputw3181_3872 4Fe-4S ferredoxin, iron-sulfur binding domain protein. (195 aa)
Spea_4132PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: saz:Sama_3608 formate dehydrogenase, iron-sulfur subunit. (189 aa)
Spea_4128PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: saz:Sama_3608 formate dehydrogenase, iron-sulfur subunit. (189 aa)
Spea_4121Electron-transferring-flavoprotein dehydrogenase; Accepts electrons from ETF and reduces ubiquinone. (549 aa)
Spea_3966PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: shw:Sputw3181_3894 4Fe-4S ferredoxin, iron-sulfur binding domain protein. (227 aa)
Spea_3944Radical SAM domain protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Radical SAM domain protein; KEGG: sbm:Shew185_2284 radical SAM domain protein. (292 aa)
Spea_3912KEGG: slo:Shew_3549 4Fe-4S ferredoxin, iron-sulfur binding domain protein. (404 aa)
Spea_3862TIGRFAM: Dimethylsulfoxide reductase chain B; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: vpa:VP1448 anaerobic dimethyl sulfoxide reductase, subunit B. (205 aa)
Spea_3321TIGRFAM: Cytochrome c oxidase cbb3 type accessory protein FixG; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sbl:Sbal_0957 4Fe-4S ferredoxin, iron-sulfur binding domain protein. (488 aa)
queGPutative iron-sulfur cluster binding protein; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr); Belongs to the QueG family. (407 aa)
Spea_3187PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: shw:Sputw3181_3558 4Fe-4S ferredoxin, iron-sulfur binding domain protein. (192 aa)
Spea_3038PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: shn:Shewana3_3618 4Fe-4S ferredoxin, iron-sulfur binding domain protein. (190 aa)
Spea_3016PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: slo:Shew_2785 4Fe-4S ferredoxin, iron-sulfur binding domain protein. (85 aa)
Spea_2995PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD linked oxidase domain protein; KEGG: shn:Shewana3_2905 FAD linked oxidase domain protein. (939 aa)
Spea_2817TIGRFAM: Dimethylsulfoxide reductase chain B; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sfr:Sfri_3683 4Fe-4S ferredoxin, iron-sulfur binding domain protein. (221 aa)
Spea_2548PFAM: FAD linked oxidase domain protein; KEGG: shw:Sputw3181_1766 FAD linked oxidase domain protein. (1016 aa)
rnfCElectron transport complex, RnfABCDGE type, C subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily. (825 aa)
rnfBElectron transport complex, RnfABCDGE type, B subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. (189 aa)
Spea_1787TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; KEGG: shm:Shewmr7_1709 succinate dehydrogenase and fumarate reductase iron-sulfur protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. (235 aa)
napFFerredoxin-type protein NapF; Could be involved in the maturation of NapA, the catalytic subunit of the periplasmic nitrate reductase, before its export into the periplasm; Belongs to the NapF family. (159 aa)
Spea_0754TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: slo:Shew_0809 formate dehydrogenase, alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (1440 aa)
Spea_0622TIGRFAM: MauM/NapG family ferredoxin-type protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: slo:Shew_3207 MauM/NapG family ferredoxin-type protein. (244 aa)
Spea_0621TIGRFAM: ferredoxin-type protein, NapH/MauN family; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: slo:Shew_3208 ferredoxin-type protein, NapH/MauN family. (298 aa)
Spea_0507PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: she:Shewmr4_0492 4Fe-4S ferredoxin, iron-sulfur binding domain protein. (236 aa)
Spea_0483PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: she:Shewmr4_0492 4Fe-4S ferredoxin, iron-sulfur binding domain protein. (235 aa)
Spea_0439Formate dehydrogenase, beta subunit; The beta chain is an electron transfer unit containing 4 cysteine clusters involved in the formation of iron-sulfur centers. (300 aa)
Spea_0395KEGG: slo:Shew_0335 succinate dehydrogenase and fumarate reductase iron-sulfur protein; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. (247 aa)
Spea_0260PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gur:Gura_1944 4Fe-4S ferredoxin, iron-sulfur binding domain protein. (228 aa)
Your Current Organism:
Shewanella pealeana
NCBI taxonomy Id: 398579
Other names: S. pealeana ATCC 700345, Shewanella pealeana ATCC 700345, Shewanella pealeana str. ATCC 700345, Shewanella pealeana strain ATCC 700345
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.