23 items (Trichoderma gamsii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TGAM01_v200667	Abhydrolase_2 domain-containing protein. (259 aa)
	TGAM01_v201525	Mortality factor 4-like protein 1. (536 aa)
	TGAM01_v202903	HDAC_interact domain-containing protein. (1452 aa)
	TGAM01_v202879	FAS1 domain-containing protein. (220 aa)
	TGAM01_v203187	Deacetylase sirtuin-type domain-containing protein. (610 aa)
	TGAM01_v203085	PHD-type domain-containing protein. (1116 aa)
	TGAM01_v203779	Uncharacterized protein. (656 aa)
	TGAM01_v204608	Acyl-protein thioesterase. (287 aa)
	TGAM01_v204506	Uncharacterized protein. (1141 aa)
	TGAM01_v204838	Deacetylase sirtuin-type domain-containing protein. (401 aa)
	TGAM01_v205366	WD_REPEATS_REGION domain-containing protein. (718 aa)
	TGAM01_v205692	Uncharacterized protein. (441 aa)
	TGAM01_v207706	Deacetylase sirtuin-type domain-containing protein. (954 aa)
	TGAM01_v207799	Palmitoyl protein thioesterase. (331 aa)
	TGAM01_v208910	Phospholipase/Carboxylesterase. (259 aa)
	TGAM01_v209724	Phospholipase/Carboxylesterase. (237 aa)
	TGAM01_v210036	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. (736 aa)
	TGAM01_v210191	Uncharacterized protein. (549 aa)
	TGAM01_v200520	Histone deacetylase RPD3. (701 aa)
	TGAM01_v205481	Deacetylase sirtuin-type domain-containing protein. (301 aa)
	TGAM01_v200180	Uncharacterized protein. (416 aa)
	TGAM01_v210097	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (496 aa)
	TGAM01_v202897	Uncharacterized protein. (216 aa)

Your Current Organism:

Trichoderma gamsii

NCBI taxonomy Id: 398673
Other names: BPI 872183, C.P.K. 2074, CBS 120075, CPK 2074, FMR 12636, G.J.S. 06-09, GJS 06-09, T. gamsii, Trichoderma gamsii Samuels & Druzhinina, 2006, Trichoderma sp. GJS 04-09

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TGAM01_v200180	TGAM01_v200520	A0A0W7VDU7	A0A2K0TRI7	Uncharacterized protein.	Histone deacetylase RPD3.	0.879
TGAM01_v200180	TGAM01_v201525	A0A0W7VDU7	A0A2P4ZYC7	Uncharacterized protein.	Mortality factor 4-like protein 1.	0.799
TGAM01_v200180	TGAM01_v203085	A0A0W7VDU7	A0A2P4ZUI5	Uncharacterized protein.	PHD-type domain-containing protein.	0.822
TGAM01_v200180	TGAM01_v204506	A0A0W7VDU7	A0A2P4ZQD6	Uncharacterized protein.	Uncharacterized protein.	0.589
TGAM01_v200180	TGAM01_v205366	A0A0W7VDU7	A0A2P4ZNQ2	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.680
TGAM01_v200180	TGAM01_v210036	A0A0W7VDU7	A0A2P4Z9V4	Uncharacterized protein.	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.	0.807
TGAM01_v200180	TGAM01_v210097	A0A0W7VDU7	A0A0W7VDN6	Uncharacterized protein.	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	0.879
TGAM01_v200180	TGAM01_v210191	A0A0W7VDU7	A0A2P4Z9G1	Uncharacterized protein.	Uncharacterized protein.	0.866
TGAM01_v200520	TGAM01_v200180	A0A2K0TRI7	A0A0W7VDU7	Histone deacetylase RPD3.	Uncharacterized protein.	0.879
TGAM01_v200520	TGAM01_v201525	A0A2K0TRI7	A0A2P4ZYC7	Histone deacetylase RPD3.	Mortality factor 4-like protein 1.	0.975
TGAM01_v200520	TGAM01_v202879	A0A2K0TRI7	A0A2P4ZVT7	Histone deacetylase RPD3.	FAS1 domain-containing protein.	0.959
TGAM01_v200520	TGAM01_v202897	A0A2K0TRI7	A0A0W7V975	Histone deacetylase RPD3.	Uncharacterized protein.	0.879
TGAM01_v200520	TGAM01_v202903	A0A2K0TRI7	A0A2P4ZVU1	Histone deacetylase RPD3.	HDAC_interact domain-containing protein.	0.959
TGAM01_v200520	TGAM01_v203085	A0A2K0TRI7	A0A2P4ZUI5	Histone deacetylase RPD3.	PHD-type domain-containing protein.	0.899
TGAM01_v200520	TGAM01_v203187	A0A2K0TRI7	A0A2P4ZUV2	Histone deacetylase RPD3.	Deacetylase sirtuin-type domain-containing protein.	0.609
TGAM01_v200520	TGAM01_v203779	A0A2K0TRI7	A0A2P4ZSZ5	Histone deacetylase RPD3.	Uncharacterized protein.	0.893
TGAM01_v200520	TGAM01_v204506	A0A2K0TRI7	A0A2P4ZQD6	Histone deacetylase RPD3.	Uncharacterized protein.	0.806
TGAM01_v200520	TGAM01_v204838	A0A2K0TRI7	A0A2P4ZQ11	Histone deacetylase RPD3.	Deacetylase sirtuin-type domain-containing protein.	0.556
TGAM01_v200520	TGAM01_v205366	A0A2K0TRI7	A0A2P4ZNQ2	Histone deacetylase RPD3.	WD_REPEATS_REGION domain-containing protein.	0.940
TGAM01_v200520	TGAM01_v205481	A0A2K0TRI7	A0A0W7VX34	Histone deacetylase RPD3.	Deacetylase sirtuin-type domain-containing protein.	0.535

page 1 of 8

Server load: low (24%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About