9 items (Trichoderma gamsii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TGAM01_v207260	Uncharacterized protein. (279 aa)
	TGAM01_v209889	Chromatin modification-related protein. (731 aa)
	TGAM01_v204506	Uncharacterized protein. (1141 aa)
	TGAM01_v210025	PHD domain-containing protein. (567 aa)
	TGAM01_v210191	Uncharacterized protein. (549 aa)
	TGAM01_v200520	Histone deacetylase RPD3. (701 aa)
	TGAM01_v203085	PHD-type domain-containing protein. (1116 aa)
	TGAM01_v201525	Mortality factor 4-like protein 1. (536 aa)
	TGAM01_v200139	Uncharacterized protein. (889 aa)

Your Current Organism:

Trichoderma gamsii

NCBI taxonomy Id: 398673
Other names: BPI 872183, C.P.K. 2074, CBS 120075, CPK 2074, FMR 12636, G.J.S. 06-09, GJS 06-09, T. gamsii, Trichoderma gamsii Samuels & Druzhinina, 2006, Trichoderma sp. GJS 04-09

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TGAM01_v200520	TGAM01_v201525	A0A2K0TRI7	A0A2P4ZYC7	Histone deacetylase RPD3.	Mortality factor 4-like protein 1.	0.975
TGAM01_v200520	TGAM01_v203085	A0A2K0TRI7	A0A2P4ZUI5	Histone deacetylase RPD3.	PHD-type domain-containing protein.	0.899
TGAM01_v200520	TGAM01_v204506	A0A2K0TRI7	A0A2P4ZQD6	Histone deacetylase RPD3.	Uncharacterized protein.	0.806
TGAM01_v200520	TGAM01_v209889	A0A2K0TRI7	A0A2K0T6T8	Histone deacetylase RPD3.	Chromatin modification-related protein.	0.604
TGAM01_v200520	TGAM01_v210025	A0A2K0TRI7	A0A2P4Z9T2	Histone deacetylase RPD3.	PHD domain-containing protein.	0.879
TGAM01_v200520	TGAM01_v210191	A0A2K0TRI7	A0A2P4Z9G1	Histone deacetylase RPD3.	Uncharacterized protein.	0.940
TGAM01_v201525	TGAM01_v200520	A0A2P4ZYC7	A0A2K0TRI7	Mortality factor 4-like protein 1.	Histone deacetylase RPD3.	0.975
TGAM01_v201525	TGAM01_v203085	A0A2P4ZYC7	A0A2P4ZUI5	Mortality factor 4-like protein 1.	PHD-type domain-containing protein.	0.969
TGAM01_v201525	TGAM01_v207260	A0A2P4ZYC7	A0A2P4ZI26	Mortality factor 4-like protein 1.	Uncharacterized protein.	0.559
TGAM01_v201525	TGAM01_v209889	A0A2P4ZYC7	A0A2K0T6T8	Mortality factor 4-like protein 1.	Chromatin modification-related protein.	0.895
TGAM01_v201525	TGAM01_v210025	A0A2P4ZYC7	A0A2P4Z9T2	Mortality factor 4-like protein 1.	PHD domain-containing protein.	0.654
TGAM01_v201525	TGAM01_v210191	A0A2P4ZYC7	A0A2P4Z9G1	Mortality factor 4-like protein 1.	Uncharacterized protein.	0.909
TGAM01_v203085	TGAM01_v200520	A0A2P4ZUI5	A0A2K0TRI7	PHD-type domain-containing protein.	Histone deacetylase RPD3.	0.899
TGAM01_v203085	TGAM01_v201525	A0A2P4ZUI5	A0A2P4ZYC7	PHD-type domain-containing protein.	Mortality factor 4-like protein 1.	0.969
TGAM01_v203085	TGAM01_v210191	A0A2P4ZUI5	A0A2P4Z9G1	PHD-type domain-containing protein.	Uncharacterized protein.	0.671
TGAM01_v204506	TGAM01_v200520	A0A2P4ZQD6	A0A2K0TRI7	Uncharacterized protein.	Histone deacetylase RPD3.	0.806
TGAM01_v204506	TGAM01_v210025	A0A2P4ZQD6	A0A2P4Z9T2	Uncharacterized protein.	PHD domain-containing protein.	0.821
TGAM01_v204506	TGAM01_v210191	A0A2P4ZQD6	A0A2P4Z9G1	Uncharacterized protein.	Uncharacterized protein.	0.809
TGAM01_v207260	TGAM01_v201525	A0A2P4ZI26	A0A2P4ZYC7	Uncharacterized protein.	Mortality factor 4-like protein 1.	0.559
TGAM01_v207260	TGAM01_v210191	A0A2P4ZI26	A0A2P4Z9G1	Uncharacterized protein.	Uncharacterized protein.	0.549

page 1 of 2

Server load: low (12%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About